Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271875g00019 ATGGATGTTCTTCATTCCATGTTTATTATGGTTGCTTATGTACTTGTTTCCTCTGTCAAAGCTTCTATGGCAGTTAATGATTCCATTGGTGTGTCCCAGTTCATGAGTGATGGCATGACCTTAGTATCCCAAGATGGAATGTTTGAGCTTGGGTTCTTCAGCCCCGGCAATTCAACAAAGCGTTACTTGGGGATCTGGTACAAGAAAGTAGCCATGCATGCTGTTGTTTGGGTTGCCAACAGGGTCAACCCCATCAATGGTAACTCAGGAAAATTAACATTGGACAACACTGGCAATATTATCCTCATCAGCAACAACGGCTCAGTTGTATGGAGTACAACCTCTCAAAGAGAACCACTGAATCCAGTGGCACACCTCATGGACAGTGGAAATCTTGTGGTATGGAATGATGGAGGTTCAGACTCAAATGACATTTTGTGGCAAAGCTTTGACTATCCAACCGATACATATTTGCTAGGGATGAAGCTAGGAAGGGATCTCCAAAATGGTTTTGAATGGCGAATAACATCTTGGAAGAGTGTAGATGATCCTTCTCCAGGTAACTTCTCTTTGGGGTTAGCCCTCAGTGATTATCCTGAGTTTGCCATAATGAATGGAACCAAAAAGTTCTCTCAGATCGGTCCTTGGAATGGCTTGTATTATAGTGGATTGCCAAGTCTAAACGCTTACTCTGATATTGAAATCAGTTATGTCAGCAACCAGAAGGAGATATACTACACCTTTAGCTCCAAGAATGGTTCTGTCATCAGCAGAACTGTAATAAACCAAACAAGTAAGGTGCTTAGTCGCTATGTCTGGGTGGAAAAGGCTCAAACATGGAGGATTTATGAGTCACTTCCTGGTGATGTCTGTGATAATTTTGGCCTTTGTGGTGCCTATGGGAGTTGCATAACCACATCAGCTCCAATTTGCCAGTGTTTAAAAGGTTTTAGGCCCAAGTCAGCAGAAGCATGGAACTCATCAAACTGGGCTCAAGGATGTGTCCGCGATGAATCATTAAGCTGCACTGACATTGGTGAAGGCATTGGCATAGCCAATACCACTGATGGATTTTTCAAATTCGAAGGCTTGAAACTACCAGATACTCAACATACTAGGCTGCTTCAGAATCTTGATATACATGGCTGCAGTGCTTTGTGCTTGAATAATTGCTCTTGTATGGCTTATACTAATTCAGACATAAGTGGTGGAGGCCATGGCTGTGTCATGTGGTTCGGCGATCTAATTGACATCAAACTGTTTCAATCTGGTGGACAAGATCTATACATCCGAATGCCTGCTTCTGAGTCAGAAAAATCAAAGATGCAAGAGTATATGGAAGGCTATGTAGATGATACGGATCTACCACTATTTGATCTACTAACTATTAATATTGCCACCGACAAGTTCTCTCTTAATAATAAGATTGGACAAGGTGGTTTTGGACCTGTGTATAAGGGAAAATTAGCACATGGACCGGAAATTGCTGTTAAGAGACTCTCACGTAGCTCTGGACAAGGAATGGCTGAATTCATAACTGAAGTAAAACTAATTGCAAAACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTGCATTCAAGGAGAAGAAAAATTGCTAGTTTATGAGTATGTGGTCAATGGTAGCCTAGACACCTTCATTTTTGATCAAACAAAAAGTAAGTTGTTAGATTGGCCTCGGCGCTTCCACATAATATTTGGAGTTGCTAGGGGACTCTTGTACCTCCATCAGGATTCTAGATTGAGGATTATTCATCGAGATCTCAAAGCAAGTAACATTTTGCTCGACGACAAATTAAATCCAAAAATATCAGATTTTGGAATGGCCAAAACTTTTGGAGGAGATCAAACAGAAGGAAACACAAATAGAGTTGTTGGAACTTAG 1908 0.4104 MDVLHSMFIMVAYVLVSSVKASMAVNDSIGVSQFMSDGMTLVSQDGMFELGFFSPGNSTKRYLGIWYKKVAMHAVVWVANRVNPINGNSGKLTLDNTGNIILISNNGSVVWSTTSQREPLNPVAHLMDSGNLVVWNDGGSDSNDILWQSFDYPTDTYLLGMKLGRDLQNGFEWRITSWKSVDDPSPGNFSLGLALSDYPEFAIMNGTKKFSQIGPWNGLYYSGLPSLNAYSDIEISYVSNQKEIYYTFSSKNGSVISRTVINQTSKVLSRYVWVEKAQTWRIYESLPGDVCDNFGLCGAYGSCITTSAPICQCLKGFRPKSAEAWNSSNWAQGCVRDESLSCTDIGEGIGIANTTDGFFKFEGLKLPDTQHTRLLQNLDIHGCSALCLNNCSCMAYTNSDISGGGHGCVMWFGDLIDIKLFQSGGQDLYIRMPASESEKSKMQEYMEGYVDDTDLPLFDLLTINIATDKFSLNNKIGQGGFGPVYKGKLAHGPEIAVKRLSRSSGQGMAEFITEVKLIAKLQHRNLVKLLGCCIQGEEKLLVYEYVVNGSLDTFIFDQTKSKLLDWPRRFHIIFGVARGLLYLHQDSRLRIIHRDLKASNILLDDKLNPKISDFGMAKTFGGDQTEGNTNRVVGT 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271875g00019 635 Gene3D Transferase(Phosphotransferase) domain 1 546 635 - -
Stsc271875g00019 635 CDD PAN_AP_plant 353 433 - -
Stsc271875g00019 635 SUPERFAMILY Protein kinase-like (PK-like) 449 635 IPR011009 -
Stsc271875g00019 635 SMART serkin_6 470 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271875g00019 635 Gene3D Phosphorylase Kinase; domain 1 431 545 - -
Stsc271875g00019 635 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 629 - -
Stsc271875g00019 635 Pfam PAN-like domain 353 418 IPR003609 -
Stsc271875g00019 635 SMART ntp_6 353 432 IPR003609 -
Stsc271875g00019 635 FunFam receptor-like serine/threonine-protein kinase SD1-8 439 545 - -
Stsc271875g00019 635 Gene3D - 20 150 IPR036426 -
Stsc271875g00019 635 SMART blect_4 32 153 IPR001480 -
Stsc271875g00019 635 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544
Stsc271875g00019 635 ProSiteProfiles Bulb-type lectin domain profile. 26 147 IPR001480 -
Stsc271875g00019 635 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 184 IPR036426 -
Stsc271875g00019 635 ProSiteProfiles PAN/Apple domain profile. 342 433 IPR003609 -
Stsc271875g00019 635 ProSiteProfiles Protein kinase domain profile. 470 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271875g00019 635 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 546 635 - -
Stsc271875g00019 635 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 150 - -
Stsc271875g00019 635 Pfam Protein tyrosine and serine/threonine kinase 471 624 IPR001245 GO:0004672|GO:0006468
Stsc271875g00019 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 591 603 IPR008271 GO:0004672|GO:0006468
Stsc271875g00019 635 Pfam D-mannose binding lectin 75 179 IPR001480 -
Stsc271875g00019 635 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
Stsc271875g00019 635 CDD B_lectin 32 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271875g00019 Stsc-Chr271875 89386 91909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271875g00019 397 635 Receptor kinase-like Gene Family AT4G23190 53.942 2.86e-77 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc271875g00019 PK_Tyr_Ser-Thr 1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271875g00019 - - aip:107612694 1023.46