Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271875g00018 ATGGCACCAGAGTATGCTATCGACGGGCTGTATTCTATAAAATCGGACATCTTCAGCTTTGGCATACTTATAATGGAGATTATATGTGGGACTAAAAATAGAGCTCTTTGCCATGCAAATCAGACTCTTAATCTCATTGGTTATGCTTGGAGGCTTTGGAAAGAGGAGAAGGCTTTAGAATTGATAGATCCAACCATGAAGGAGTCATGTGAAATCTCAGAAGTAATGCGTTGCATCCATGTTAGTCTGTTGTGTGTGCAACAATACCCTGAAGATAGGCCTACAATGGCATCTGTGCTTCTCATGTTAGCAAGTGAGATGGATTTAGTTGAGCCTAAAGAGCCAGGCTTCTTTCCCAAGAGAGCTTCTATAGAAGCAAATTCGCACCCTCATCAATCTGAACTGTCTACAAATGATGAATTAACCGTTACCTCGTTAGATGGCCGGTGA 450 0.4178 MAPEYAIDGLYSIKSDIFSFGILIMEIICGTKNRALCHANQTLNLIGYAWRLWKEEKALELIDPTMKESCEISEVMRCIHVSLLCVQQYPEDRPTMASVLLMLASEMDLVEPKEPGFFPKRASIEANSHPHQSELSTNDELTVTSLDGR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271875g00018 149 Pfam Domain of unknown function (DUF3403) 106 149 IPR021820 GO:0004674
Stsc271875g00018 149 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 146 - -
Stsc271875g00018 149 MobiDBLite consensus disorder prediction 121 149 - -
Stsc271875g00018 149 Pfam Protein tyrosine and serine/threonine kinase 1 99 IPR001245 GO:0004672|GO:0006468
Stsc271875g00018 149 MobiDBLite consensus disorder prediction 126 149 - -
Stsc271875g00018 149 Gene3D Transferase(Phosphotransferase) domain 1 1 115 - -
Stsc271875g00018 149 SUPERFAMILY Protein kinase-like (PK-like) 1 123 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271875g00018 Stsc-Chr271875 88773 89297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271875g00018 1 147 Receptor kinase-like Gene Family AT4G23140 44.595 4.94e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc271875g00018 PK_Tyr_Ser-Thr 5.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271875g00018 - - aip:110265385 280.796