Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271875g00016 ATGAAGTACCTCAGAAGCTGTCATGCATTGGGAATTCTTTCTTTCATAGTGATCCTTGCTTACTTACTTTCTTCTTCTCTTGCCACCGAACTTGATTCTATTCGTGTTTCCCAGTCCCTCAGTGATGGCATGACCTTAGTGTCAAGAGGTGGAAAATTTGAACTTGGTTTCTTCAGCCCTGGTAATTCACAGAAGCGTTACTTGGGAATTTGGTACAAGAATATCCCAGTTCGCACAGTTGTTTGGGTTGCCAACAGGGTCAACCCCATTAATGATTTTTCAGGAATTTTAACAATAAATAGAACAGGCAATCTTTTGCTCACAGAAAATGGCACTGAGACTACGTTTTGGAGCACATTCTCTCGAAAACAAGCAAAGAATCCAGTGTTGGAGCTCTTGGATAGTGGCAATCTTGTGTTAAGGAATGAAGGGGAATCAAATCCAAAGGCCTATTTATGGCAAAGCTTTGATTATCCGTCAGATACATTCTTGCCAAACATGAAGTTGGGAAGGGAACTCCAAAATGGTTTTGATTGGCGCATAACTTCTTGGAAGAGTCCAAATGATCCATCCCTTGGAGATTTTTCTGTTGGTTTAGTTATCAGTGATTATCCTGAGTTTTCGGTTATGAATGGCACAAAAAAATTCAATCGTCTTGGACCTTGGAATGGCCTTTACTTCAGCGGATACCCAAATGTGTCCTATACATATATTTTTGAAGTCAGTTTTGTCACAAACAAGGATGAGATATCCTACAGCTATAACGCGAAGATAGATTCTGTCATTTCAAGAATTGTAATAAACCAAAGTCATTCTTTTACACAGTATTTCTGGGATGAGAATGTTCAGAATTGGAGATATTTTGAATCATTGTCAGGTGATGTATGTGTTACATATGACCTTTGCGGAGCCTATGGTTATTGCAGTGTAACAGAAGCACACGTCTGCCAATGTTTAAAAGGGTTCCATCCAAAGTCACGAGAAGCTTGGAACTCAAACAACTTCACACAAGGATGCATTCGCGACAAACCATTAAGCTGCAATAATAATGTCACAAGCACTGATGGTTTTGTCAAATACACAGGCTTGAAAGTGCCAGATACTCAGCATACTAAGCTGCATGAGAATATTACTTTAGATGAATGCAGAAATTTTTGTTTGAAGAACTGCTCTTGTATGGCTTATACCAATTCAGACATAAGAGGAGGAGGAAGTGGCTGTGTCATGTGGTTTGGCGATCTAATTGACATCAGAGTCTTTCAATCCGGTGGACAAGATCTATACATCCGAATGCCTGCTTTTGAGTCAGAAAAATCAAAGATCAACGAATTTATGGAAGGGTATGTAAATGATACGGATCTACCACTGTTTGATCTACTAACAATTAGTACTGCAACGCACAAGTTCTCATTGAATAACAAGATTGGACAAGGTGGTTTTGGACCTGTTTATAAGGGAAAATTAGCAGATGGACTTGAAATTGCTGTGAAGAGACTCTCATCTAGCTCTACACAAGGAATGCCTGAATTCTTAACTGAAGTGAAGTTAATTGCAAAACTTCAGCACCGTAATCTAGTAAAACTTCTCGGTTGCTGCATTCAAGGAGAAGAAATTTTATTAGTTTATGAATATGTGGTTAATGGTAGCCTGGACAACTTCATCTTTGATCAAACAAAAAGTAAGTTGTTGGATTGGCCTCAACGCTTCGGCATAATATATGGAGTTACCAGGGGACTCTTGTATCTTCATCAAGATTCAAGATTGAGAATTATTCATAGAGATCTTAAAGCAAGTAACGTATTACTTGATGTCAAATTAAATCCAAAAATATCAGATTTCGGAATGGCCAGAACTTTTGGAGGAGATCAGACTGAAGGAAACACAAATAGAATCGTTGGGACTTATGGATAA 1911 0.3851 MKYLRSCHALGILSFIVILAYLLSSSLATELDSIRVSQSLSDGMTLVSRGGKFELGFFSPGNSQKRYLGIWYKNIPVRTVVWVANRVNPINDFSGILTINRTGNLLLTENGTETTFWSTFSRKQAKNPVLELLDSGNLVLRNEGESNPKAYLWQSFDYPSDTFLPNMKLGRELQNGFDWRITSWKSPNDPSLGDFSVGLVISDYPEFSVMNGTKKFNRLGPWNGLYFSGYPNVSYTYIFEVSFVTNKDEISYSYNAKIDSVISRIVINQSHSFTQYFWDENVQNWRYFESLSGDVCVTYDLCGAYGYCSVTEAHVCQCLKGFHPKSREAWNSNNFTQGCIRDKPLSCNNNVTSTDGFVKYTGLKVPDTQHTKLHENITLDECRNFCLKNCSCMAYTNSDIRGGGSGCVMWFGDLIDIRVFQSGGQDLYIRMPAFESEKSKINEFMEGYVNDTDLPLFDLLTISTATHKFSLNNKIGQGGFGPVYKGKLADGLEIAVKRLSSSSTQGMPEFLTEVKLIAKLQHRNLVKLLGCCIQGEEILLVYEYVVNGSLDNFIFDQTKSKLLDWPQRFGIIYGVTRGLLYLHQDSRLRIIHRDLKASNVLLDVKLNPKISDFGMARTFGGDQTEGNTNRIVGTYG 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271875g00016 636 Gene3D Hepatocyte Growth Factor 348 428 - -
Stsc271875g00016 636 Pfam PAN-like domain 351 417 IPR003609 -
Stsc271875g00016 636 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 434 544 - -
Stsc271875g00016 636 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 545 636 - -
Stsc271875g00016 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 590 602 IPR008271 GO:0004672|GO:0006468
Stsc271875g00016 636 SMART ntp_6 352 431 IPR003609 -
Stsc271875g00016 636 SUPERFAMILY Protein kinase-like (PK-like) 449 635 IPR011009 -
Stsc271875g00016 636 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 190 IPR036426 -
Stsc271875g00016 636 Gene3D Phosphorylase Kinase; domain 1 431 544 - -
Stsc271875g00016 636 Pfam D-mannose binding lectin 79 185 IPR001480 -
Stsc271875g00016 636 SMART blect_4 37 159 IPR001480 -
Stsc271875g00016 636 ProSiteProfiles PAN/Apple domain profile. 347 432 IPR003609 -
Stsc271875g00016 636 CDD PAN_AP_plant 344 432 - -
Stsc271875g00016 636 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 628 - -
Stsc271875g00016 636 SMART serkin_6 469 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271875g00016 636 ProSiteProfiles Protein kinase domain profile. 469 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271875g00016 636 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 346 431 - -
Stsc271875g00016 636 Pfam Protein tyrosine and serine/threonine kinase 470 623 IPR001245 GO:0004672|GO:0006468
Stsc271875g00016 636 Gene3D Transferase(Phosphotransferase) domain 1 545 636 - -
Stsc271875g00016 636 Gene3D - 26 156 IPR036426 -
Stsc271875g00016 636 ProSiteProfiles Bulb-type lectin domain profile. 31 153 IPR001480 -
Stsc271875g00016 636 CDD B_lectin 37 159 IPR001480 -
Stsc271875g00016 636 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 156 - -
Stsc271875g00016 636 Pfam S-locus glycoprotein domain 218 326 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271875g00016 Stsc-Chr271875 81063 87591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271875g00016 396 636 Receptor kinase-like Gene Family AT4G23190 52.675 3.17e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc271875g00016 PK_Tyr_Ser-Thr 6.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271875g00016 - - aip:110265385 1042.34