Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271875g00015 ATGGACATTCTCTCTTCCACATTGATGCTTGCTTACATACTTTCTTCTTCTTCTCTTGCCATTGAAATTGATTCCATTGCTGAGTCTCAGTATCTCACTGATAACATGACCTTAGTTTCCCAAAATGAAACTTTTGTACTAGGCTTCTTCAGCCTTGGCGATTCGCCGAAGCGTTACTTGGGAATTTGGTACAAGAAAATCCCAGTTCAGACAGTTGTTTGGGTTGCCAATAGGGACAAAGCCATTAATGGTACCTCAGGAAAGTTAATATTGAACAGCACAGGGAATCTTGTACTCAAAGAAAATGAGACTATAATTTGGAACACCACCATTCAAAAGCAAGCAAGGAATCCAGTGCTAGAGCTTTTGGACAGTGGAAATCTTGTGGTAAGAAATGGTGGAGATCCAAATCCAGAGGACTATTTGTGGCAAAGCTTTGATCATCCATGCGATACGCAGTTGCAAGGAATGAAGATAGGAAGGGACCTCAAGAATGGTTTAGAGTGGAGACTAACACCCTGGAAGAGCCTGGATGATCCCTCGGCCGGAGACTTTTCTTATGGTTTCTTGCTGAGTGATTATCCTGATCTCTCAGTTATGAAAGGAACAAAAAAGCAACTTCTGATTGGACCTTGGAATGGCATATACTTTAGTTCAATCCCAGGTACTACCCTTGATCTACTTCATGAAATCGATTATGTTGCGAACGAGGACGAGATATTCTTCACCTTTAGACCCAATATTGAGGCTGTCCTCACAAGACTTGTGATAAACCAATCAAGTCGTATTGTTGTTCACTATGTCTGGGAAGATACACTTCAAATTTGGAAACAATTTGGATTCATATCACTTGATGTGTGTACTTATGGTGTTTGTGGACCCTATGGTTATTGCAGTGTAGCAGACACAAATAATGTTTGCCAATGTTTAGAAGGGTTCACTCCAAAGTCACCACAATCATGGAGCTCATCCAACTGGACTCAAGGATGCGTCCGAAACGAACCATTAAGCTGTAATAATGTCACAACCACTGATCGGTTTGTCAATTATACAGGCTTGAAAGTTCCAGACACTCAATATACTAAGGTGGATAAGAATATTAGTTTAGATGAATGCAAACATCTTTGCTTGAAGAATTGCTCTTGTATGGCTTATACTAATTCAAATATAAGTGGAAATGGTAGTGGCTGTGTGATGTGGTTTGGTGATCTAATTGACCTCAAGAAGTTTCAAGAAAACGGACAAAATCTATATATCCGAATGTCGGGTTCTAATTCAGTGTTACAGCATGGGCACAAGATGCAAGTCATAATTGCTGCTACAATTGCTGCTACTTTTGGGATGCTTTTACTTTGTCTTATATACAGAGTCAGAAGTAACACTGATGAAAAGTCAAACTCAGAAGAATATGTTGAAGGATATGTAACTGATTCAGATCTACCACTGTTTGATCTACTAACAATTACTACTGCCACTGACAACTTCTCATTGTGTAACAAGATTGGACAAGGTGGTTTTGGACCTGTATATAGGGGGAAATTACCGGGTGGACAAGAAATTGCTGTTAAGAGACTTTCACATGGTTCAGACCAAGGAATAACCGAATGTATAACCGAAGTCCGGTTGATCGCGAAACTTCAGCAACGGAATTTAGTAAAACTTCTTGGTTGCTGCATTCAAGGACAAGAAAAATTGTTAGTTTATGAATACATGGTCAATGGCAGCCTAGACAACTTCATTTTTGATCGAACAAAAGGCGAGTTGCTGGGTTGGTCCCAACGCTTCCTCATAATATATGGAGTTGCTAGGGGACTTTCATATCTTCACCATGATTCTAGATTGAGAATTATCCATCGAGATCTCAAAGCAAGTAACATTTTACTCGACGAGAACTTAAATCCTAAAATCTCAGATTTTGGAATTGCTAAAGCTTTCGGAGGAGATCAAACTCACGGAAACACAAGAAGAGTTATTGGGACTTAG 1983 0.3964 MDILSSTLMLAYILSSSSLAIEIDSIAESQYLTDNMTLVSQNETFVLGFFSLGDSPKRYLGIWYKKIPVQTVVWVANRDKAINGTSGKLILNSTGNLVLKENETIIWNTTIQKQARNPVLELLDSGNLVVRNGGDPNPEDYLWQSFDHPCDTQLQGMKIGRDLKNGLEWRLTPWKSLDDPSAGDFSYGFLLSDYPDLSVMKGTKKQLLIGPWNGIYFSSIPGTTLDLLHEIDYVANEDEIFFTFRPNIEAVLTRLVINQSSRIVVHYVWEDTLQIWKQFGFISLDVCTYGVCGPYGYCSVADTNNVCQCLEGFTPKSPQSWSSSNWTQGCVRNEPLSCNNVTTTDRFVNYTGLKVPDTQYTKVDKNISLDECKHLCLKNCSCMAYTNSNISGNGSGCVMWFGDLIDLKKFQENGQNLYIRMSGSNSVLQHGHKMQVIIAATIAATFGMLLLCLIYRVRSNTDEKSNSEEYVEGYVTDSDLPLFDLLTITTATDNFSLCNKIGQGGFGPVYRGKLPGGQEIAVKRLSHGSDQGITECITEVRLIAKLQQRNLVKLLGCCIQGQEKLLVYEYMVNGSLDNFIFDRTKGELLGWSQRFLIIYGVARGLSYLHHDSRLRIIHRDLKASNILLDENLNPKISDFGIAKAFGGDQTHGNTRRVIGT 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271875g00015 660 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 180 IPR036426 -
Stsc271875g00015 660 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Stsc271875g00015 660 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 571 660 - -
Stsc271875g00015 660 Gene3D - 19 146 IPR036426 -
Stsc271875g00015 660 ProSiteProfiles PAN/Apple domain profile. 338 422 IPR003609 -
Stsc271875g00015 660 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 146 - -
Stsc271875g00015 660 ProSiteProfiles Bulb-type lectin domain profile. 23 143 IPR001480 -
Stsc271875g00015 660 Pfam PAN-like domain 341 407 IPR003609 -
Stsc271875g00015 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Stsc271875g00015 660 Gene3D Hepatocyte Growth Factor 339 420 - -
Stsc271875g00015 660 CDD PAN_AP_plant 335 420 - -
Stsc271875g00015 660 CDD B_lectin 29 149 IPR001480 -
Stsc271875g00015 660 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 458 570 - -
Stsc271875g00015 660 Pfam D-mannose binding lectin 71 175 IPR001480 -
Stsc271875g00015 660 Pfam Protein tyrosine and serine/threonine kinase 497 649 IPR001245 GO:0004672|GO:0006468
Stsc271875g00015 660 Gene3D Phosphorylase Kinase; domain 1 455 570 - -
Stsc271875g00015 660 SMART blect_4 29 149 IPR001480 -
Stsc271875g00015 660 Gene3D Transferase(Phosphotransferase) domain 1 571 660 - -
Stsc271875g00015 660 SMART serkin_6 495 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271875g00015 660 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Stsc271875g00015 660 ProSiteProfiles Protein kinase domain profile. 495 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271875g00015 660 SUPERFAMILY Protein kinase-like (PK-like) 471 660 IPR011009 -
Stsc271875g00015 660 SMART ntp_6 342 421 IPR003609 -
Stsc271875g00015 660 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271875g00015 Stsc-Chr271875 75596 77980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271875g00015 483 660 Receptor kinase-like Gene Family AT4G04510 65.169 1.42e-68 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc271875g00015 PK_Tyr_Ser-Thr 3.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271875g00015 - - adu:107463269 879.396