Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271873g00040 ATGGGAAGAGCTCCTTGCTGTGACAAAGCTAATGTAAAGAGAGGTCCATGGTCTCCTGAAGAAGATGAGAAGCTCAAGAACTACATAGACAAATATGGCACTGGTGGTTTGAAAAGGTGTGGAAAGAGCTGTAGACTGAGATGGCTGAATTATCTGAGACCTAACATTAAGCATGGTGAGTTCTCTGAAGAAGAAGATAGAGTAATCTGCAACCTGTTTGCTACCATTGGAAGCAGGTGGTCAATCATTGCATCTCAATTGCCAGGCAGGACTGACAATGATATCAAGAATTACTGGAACACTAAGCTTAAGAAGAAAATGATCATGGCCATCAATAACAGTAATAATCCAACATCATCATCATCATCATTCAGCCATAATCATCATCATTTCAATGCCCCTGCTGCTGGATCCTCCTATTCTTCATACTCTTCCACTGCTTCCAATTCCAATTCCAACTTTCAAGGGCAAGAAAGCTTGATGTTTATGTTTGGGGGTGAAGCTACTGCTACTAGCTGCAGCTCTTCTGATGCAAGCTGCAACAACAACAATATCAATAACAATCATGTGAATGTGAATGTGAATGTGATAGATCAGCATGATCATCATGGAACTTTTGTTGATCTCTACACTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTGGAGGAAGAGGAATAATGTCATGGGGAGAAGAAAATCCATTATTGGAGGATTATGGCATAGAAGAAATCAAAGAGCTAATAGCCACTACTACTGCTACTAGTTGTAACAACTTTTTGTTTGGTGAAAAGAAGACAGAGGAAAGGGTCATGTACTACTACTGA 849 0.3769 MGRAPCCDKANVKRGPWSPEEDEKLKNYIDKYGTGGLKRCGKSCRLRWLNYLRPNIKHGEFSEEEDRVICNLFATIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMIMAINNSNNPTSSSSSFSHNHHHFNAPAAGSSYSSYSSTASNSNSNFQGQESLMFMFGGEATATSCSSSDASCNNNNINNNHVNVNVNVIDQHDHHGTFVDLYTNNNNNNNNNNNNNNNNNSGGRGIMSWGEENPLLEDYGIEEIKELIATTTATSCNNFLFGEKKTEERVMYYY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271873g00040 282 FunFam Transcription factor RAX3 7 58 - -
Stsc271873g00040 282 PANTHER OS09G0431300 PROTEIN 1 228 - -
Stsc271873g00040 282 MobiDBLite consensus disorder prediction 214 233 - -
Stsc271873g00040 282 Pfam Myb-like DNA-binding domain 14 52 IPR001005 -
Stsc271873g00040 282 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
Stsc271873g00040 282 Gene3D - 7 58 - -
Stsc271873g00040 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 107 IPR017930 -
Stsc271873g00040 282 ProSiteProfiles Myb-like domain profile. 9 103 IPR001005 -
Stsc271873g00040 282 SUPERFAMILY Homeodomain-like 11 99 IPR009057 -
Stsc271873g00040 282 CDD SANT 60 103 IPR001005 -
Stsc271873g00040 282 SMART sant 57 105 IPR001005 -
Stsc271873g00040 282 SMART sant 13 54 IPR001005 -
Stsc271873g00040 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 52 IPR017930 -
Stsc271873g00040 282 Gene3D - 60 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271873g00040 Stsc-Chr271873 280616 281756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271873g00040 1 108 MYB Transcription Factor Family AT5G57620 80.508 5.83e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc271873g00040 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271873g00040 K09422 - gmx:778084 249.98