Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271873g00034 ATGGACAATCCCTTCCAACCCCATCTTCCTCCGCCATACCCCCCCCTCACCGCAGGTGATTTCGGACTCTCAGATGACGACGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGAGGACGACGACGAAGAAGAGGACGAAGGTTCATCGCCTAGGGCTTTGCCAGTGGCTCCTTCCACAACTTCTACTCCACATCCAGTTGTTATCACCGTGGAATCGCAGTCGCAAAACAGCTTCGGAGACGACGAGGGAAGCAACAAGCGCCGCAGAACGGAAGGCCCCGAGGCGTCGTCTTCGTCTTTGGCAATTGACGGCAGTCAAGGCAGCGAGTGGAACCGCACCGACATTGACGGCCTCTTCTGCCCTATCTGTATGGAAGCTTGGACCAATAGCGGCGACCACCATATCTGTTGTCTTCCTTGTGGACACATATTCGGTATGTCTTGTATCAAAAGATGGCTTCAACAGCGACGAAGTTCCGGGAAGTGTCCACAATGCAATATGAAATGCTCAGTAAAGGATCTGAGGAAACTCTATGCATCTCGACTAGTTACTGTCGATGATGAATCTCAGAAGACAATTCGGTCACTTGAAGCCAAATGTGCTGCACTGGAAAGTAAGGGTGCTGATTGGCTTAAGAAAGAGGCTGTATGTCGGAAAAAAGAAGCAGCATATCGTCTGGAAGTTCAGAAGCTTAGAGAGAGAAATGCTAATTTGGAGCAGCAGCTGCTGGATATGCAGAGCAGGCAATATGGGCTCATACACGGCACTCAGAATTATCAGTGGATATCTGAAAAGGAGCACAACTTTGGCCTTAAGTCCCATGCAAAAGGATCTTTTTGCAATTTTGAGTTACAGAAAGCATTTGATATTAATGATGCACGAGTCTTCGATATGGATGTATCCAATCAAATTTTACTAATTTCACGAAAGCCAAGGGTGATAGATGGACCAGACATTCTAACTAAAATGAGCTTGATACCTCCATTTGATATTGAAGATATTTTATTGCCTTCTACTACCAAGGGTATTAAAGACCTGCATATTTCTCCTTCTGATAAAAGCCTAGCCCTCTATGCTTCAATAGGGAAGAAGTTATCAGTGGTCAGCCTGCAGAGCAAGAATACTGTTATCAACTATGATCTACAGGTTTCTCCTTGGTCATGTTCTTGGGATCTCAACAGTTCTCATTACATGTATGCTGGACTTCAGAATGGTTCTGTCTTGGTGTTTGATATGCGACAAACTGCAGGACCCATGAAATCTTTAGTTGGATTGACCAGCAACCCCGTTCATACTGTTCATTCTCTTCTGCAAACTACAAGTCTTCCTAACACCATCTTATCTGCATCTGCCATTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAAGGGCCATCCATGATTCCTGACACTTATAACCAAGGAGTTTGTATATCCGTTGCCTATTGCCCTAGCAGTGACGACGTTGTTGTTTCATACCGTCCAAAATTTGACATGTCAACGGGTACCCAGCTTTCTCAACTATCATCCACTCCTTCTCAAGTGATTGGATCAGCAGTGCAGGGCTGTCATGTCTTATTCAAAAGACAGGGCACTGATCATTTTGAAAAGATGGGTTCCTCGTATGCCAATCTAAGTAAAATTAGATTTCTAAAACATGCTATTGTAGACATGGGGGGTCCAAGCAGATTGTTTGCTGCTATAGATGAAGCAACATTTGAATTGATCTTGCACGAGCTGCCTTCTTTTAGCGTTATCCAACGATTCAAACTGCCTTCTCCGGCTCGTGATATTAGGTACTTTCCGAGCCATGGAATTCTTGGTTGTTTGAGTGAGACAACATTGCAACTTTTCGAAGTCTCGTGTGCAAGGTAA 1890 0.4466 MDNPFQPHLPPPYPPLTAGDFGLSDDDDEEEEEEEEEEEEEEEDDDEEEDEGSSPRALPVAPSTTSTPHPVVITVESQSQNSFGDDEGSNKRRRTEGPEASSSSLAIDGSQGSEWNRTDIDGLFCPICMEAWTNSGDHHICCLPCGHIFGMSCIKRWLQQRRSSGKCPQCNMKCSVKDLRKLYASRLVTVDDESQKTIRSLEAKCAALESKGADWLKKEAVCRKKEAAYRLEVQKLRERNANLEQQLLDMQSRQYGLIHGTQNYQWISEKEHNFGLKSHAKGSFCNFELQKAFDINDARVFDMDVSNQILLISRKPRVIDGPDILTKMSLIPPFDIEDILLPSTTKGIKDLHISPSDKSLALYASIGKKLSVVSLQSKNTVINYDLQVSPWSCSWDLNSSHYMYAGLQNGSVLVFDMRQTAGPMKSLVGLTSNPVHTVHSLLQTTSLPNTILSASAIGLCQWNIDSEEGPSMIPDTYNQGVCISVAYCPSSDDVVVSYRPKFDMSTGTQLSQLSSTPSQVIGSAVQGCHVLFKRQGTDHFEKMGSSYANLSKIRFLKHAIVDMGGPSRLFAAIDEATFELILHELPSFSVIQRFKLPSPARDIRYFPSHGILGCLSETTLQLFEVSCAR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271873g00034 629 SUPERFAMILY WD40 repeat-like 293 490 IPR036322 GO:0005515
Stsc271873g00034 629 PANTHER RFWD3 PROTEIN 28 627 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Stsc271873g00034 629 SUPERFAMILY RING/U-box 116 177 - -
Stsc271873g00034 629 MobiDBLite consensus disorder prediction 1 17 - -
Stsc271873g00034 629 MobiDBLite consensus disorder prediction 1 113 - -
Stsc271873g00034 629 MobiDBLite consensus disorder prediction 58 85 - -
Stsc271873g00034 629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 236 IPR013083 -
Stsc271873g00034 629 CDD mRING-C3HGC3_RFWD3 121 183 - -
Stsc271873g00034 629 Coils Coil 226 253 - -
Stsc271873g00034 629 Coils Coil 191 211 - -
Stsc271873g00034 629 ProSiteProfiles Zinc finger RING-type profile. 125 171 IPR001841 -
Stsc271873g00034 629 Pfam Ring finger domain 125 171 IPR001841 -
Stsc271873g00034 629 MobiDBLite consensus disorder prediction 99 113 - -
Stsc271873g00034 629 SMART ring_2 125 170 IPR001841 -
Stsc271873g00034 629 Gene3D - 291 511 IPR015943 GO:0005515
Stsc271873g00034 629 MobiDBLite consensus disorder prediction 22 52 - -
Stsc271873g00034 629 Coils Coil 23 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271873g00034 Stsc-Chr271873 237326 242221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271873g00034 43 183 C3H Transcription Factor Family AT3G07200 27.972 6.93e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271873g00034 K15691 - gmx:100818898 675.626