Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271873g00022 ATGCTCCATAGAAGCTGCATTTTGCTACTGTGTGTTGTTGGTTCCATGTTAGCAGTTGAAGGAGCTGCTGCTGCAATGCTGAACCTAACTCTTCCAGGACAACACCCTGACCCTGAAGCTGTTGCCAATGAAGTCCACAGGAAGGTGAATGGTTCACTTGCAAGAAGGGAAATGCTGCAATCAGTGACTTCTTGCCTAACAGGTAACCCCATAGATGATTGCTGGAAATGTGACCCAGATTGGCCCAACAACAGGCAGAGGCTAGCTGACTGCGCCATTGGGTTCGGCCAACATGCCAAGGGAGGAAAGGATGGGGAGTTCTACATTGTCACTGATTCTTCAGATGATGATGCTGTGAACCCTAAGCCAGGAACACTCAGATATGCTGTTATACAGAATGAGCCTCTTTGGATTGTGTTCCCTAGTAACATGATGATTAAGCTCTCTCAAGAACTCATCTTCAACAGTTACAAGACCCTTGATGGCCGTGGTGCTGATGTCCACATTGTTGGTGGTGGATGCATTACTCTCCAGTATATAAGTAATGTTATCATACACAACATTCATATCCACCATTGTCACCCTTCAGGGAACACAAACGTCCGTTCAAGCCCTGACCATTACGGGTACCGAACGCTATCGGATGGCGATGGAATCTCCATATTTGGGGCCAAAGACATATGGATCGATCACTGCACGCTGTCACGGTGCAAGGATGGGCTCATCGACGCAGTCATGGGCTCCACCGGAATCACAATCTCTAACAACTACTTCTCCCACCATAATGAAGTCATGCTCTTAGGCCACAGTGATGACTACCTGCCAGACTCCGGCATGCAGGTGACCATTGCCTTCAACCATTTCGGCCCCATGCTCGTCCAGCGCATGCCACGCTGCCGCCGGGGCTACATCCATGTGGTCAACAATGACTTCACACGGTGGGAGATGTACGCCATTGGAGGCAGTGGGGAGCCCACCATTAACAGCCAGGGGAACCGCTACACGGCGCCCCTAAACCCCTTCGCGAAGGAGGTAACCAAGAGGGTTGACACTGCAGAGGGTAAGTGGAAGGGCTGGAATTGGAGGTCGGAGGGGGATATCATGGTGAATGGTGCGTTTTTTGTGGCCTCTGGGGAAGGTGTTGAGGTTAAGTATGAGAAGGCTTATAGTGTTGAGCCTAAGTCTGCTGATAGGATTTCTCAGCTTACCATGGGTGCCGGCGTTCTCGGCGTTGCCAAGGACAACAGTGTGGGAATGTGGAGCAAAGGACCCAACAGCCAGGGCCAGGTCCAGGGTCAGGGCGACGGAGTCATATGGTTGGTGCCGGAAGAAACAGACGACTATTCGCGGAGCACAAGGGTGGTGCTGCCTTCTTCACTGACTTTCACCTTTGTGTGGTCTTTCCTGTTCTTTTTGAAACTATCTTGTTACAACATACCATTAACGGTTATTCTATAA 1458 0.5041 MLHRSCILLLCVVGSMLAVEGAAAAMLNLTLPGQHPDPEAVANEVHRKVNGSLARREMLQSVTSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQHAKGGKDGEFYIVTDSSDDDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPDHYGYRTLSDGDGISIFGAKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGPMLVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGEPTINSQGNRYTAPLNPFAKEVTKRVDTAEGKWKGWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSVEPKSADRISQLTMGAGVLGVAKDNSVGMWSKGPNSQGQVQGQGDGVIWLVPEETDDYSRSTRVVLPSSLTFTFVWSFLFFLKLSCYNIPLTVIL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271873g00022 485 Gene3D - 68 410 IPR012334 -
Stsc271873g00022 485 PANTHER PECTATE LYASE 18-RELATED 32 413 IPR045032 GO:0030570
Stsc271873g00022 485 FunFam Pectate lyase 68 410 - -
Stsc271873g00022 485 SUPERFAMILY Pectin lyase-like 61 397 IPR011050 -
Stsc271873g00022 485 Pfam Pectate lyase 153 326 IPR002022 -
Stsc271873g00022 485 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Stsc271873g00022 485 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Stsc271873g00022 485 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Stsc271873g00022 485 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Stsc271873g00022 485 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Stsc271873g00022 485 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Stsc271873g00022 485 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Stsc271873g00022 485 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Stsc271873g00022 485 SMART amb_all 143 340 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271873g00022 Stsc-Chr271873 183570 185591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271873g00022 1 421 Polysaccharide Lyase AT3G53190 78.140 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271873g00022 K01728 - gmx:100775595 766.918