Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271873g00018 ATGCCGATCAGAAACATCGCAATCGGAAGGCCCGAAGAGGCAACTCACCCAGACACCTTGAAGGCTGGACTCGCTGAGTTCATCTCTACCTTGATCTTCGTCTTCGCCGGTTCAGGTTCCAGCATCGCTTACAACAAGCTCACTAACGATGGTGCCGCCACCCCCGCCGGCCTCATCGCCGCCGCCATCGCCCATGCATTCGCCCTCTTCGTCGCTGTCTCCGTTGGTGCCAACATCTCCGGTGGCCACGTCAACCCCGCCGTCACCTTCGGCGCCTTCGTCGGCGGCAACATCACCCTCCTCCGCGGCATCGTCTACGTCATCGCCCAGCTCCTCGGCTCCATCGTCGCTGCCTTGCTCCTCAAGTTCGTCACCGCATCCACTGTTCCAGCATTTGCACTGTCATCAGGTGTAGGCGTTGGTGAGGCTTTGGTGTTGGAGATTGTGTTGACTTTCGGTTTGGTGTACACTGTGTACGCAACCGCCGTTGACCCGAAGAAGGGTAGTTTGGGAACTATTGCACCAATCGCGATTGGTTTCATCGTTGGTGCTAACATCCTTGTGGGTGGGGCCTTCGACGGTGCATCCATGAACCCTGCCGTTTCCTTCGGACCCGCCGTGGTGAGCTGGAGCTGGAGCAACCACTGGATCTACTGGGTGGGCCCACTCGTCGGTGGTGGTCTTGCCGGAGTCATCTACGAAGTTCTCTTCATCAGCCACACCCATGAGCAGCTCCCAACCACTGACTACTAG 753 0.583 MPIRNIAIGRPEEATHPDTLKAGLAEFISTLIFVFAGSGSSIAYNKLTNDGAATPAGLIAAAIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYVIAQLLGSIVAALLLKFVTASTVPAFALSSGVGVGEALVLEIVLTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVSWSWSNHWIYWVGPLVGGGLAGVIYEVLFISHTHEQLPTTDY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271873g00018 250 FunFam Probable aquaporin TIP1-1 4 250 - -
Stsc271873g00018 250 PANTHER AQUAPORIN-8 6 245 IPR034294 -
Stsc271873g00018 250 NCBIfam MIP family channel protein 25 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271873g00018 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271873g00018 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Stsc271873g00018 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271873g00018 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Stsc271873g00018 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271873g00018 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271873g00018 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271873g00018 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271873g00018 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271873g00018 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271873g00018 250 SUPERFAMILY Aquaporin-like 12 246 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271873g00018 Stsc-Chr271873 152562 153967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271873g00018 1 250 Major Intrinsic Protein MIP AT2G36830 81.275 1.33e-145 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271873g00018 K09873 - gmx:547967 427.172