Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271873g00014 ATGGAACAGGTTGAGGTGCCGATGGAACAAGAGGAACAAGTGGTGCAGACTATGATGATGAAGGGAAAGCGCACCAAGCGTCAGAGGCTACCTTCCCCGTTAAGGTTAGCCATGGCCATGCCTTCTTCAACCTCTTCAACAACCTCCTCCTTCGGTTTCGATATCGCTACATCAACTACCCCAACCACAACCGCAAACGACGACGAAGACCTGGCCAATTGCTTGATCCTCCTGGCTCAAGGCGGACGTGGACCCCACAATAACCGTCATAACAACAACCACAACAAGAAGAATGAGAGTTTGTTTAATGTTTACGATTGCAAGACTTGTAACAGAAGCTTCCCTTCCTTCCAAGCTTTGGGAGGACACAGAGCCAGCCACAAGAAGCCCAAGATCTTATCAAACAGTACCGCTACAGAACATAATTACCATAATGACCCTACAAGCACCGCCCTCACCTTGCAAATATCAAACACCACCTCCTTGTACGGCACCGCCGCCACCGCCACCGCCGCCATGGAAACTACTACTGCTGCTACTCCTAATAGTTGCAAGACAAATAATAACAATAAGGTTCACGAGTGTTCCATTTGCGGTGCTGAATTCACTTCTGGACAAGCTTTGGGCGGTCATATGAGGAGGCACAGGGGTTTCTTGACCACGTCTTCAGCGGCAACCGCAACCGCAACGGCCACCACAACAACAACCACAACATCATCATCTGTTAGTGGTGCAAATTTAAATGGTATTGATCATCAAGAGACGAAGAACAATATTCTGAAGCTGGATCTAAATCTTCCGGCGCCGGAAGATGATCATCATCATCACAAGAGGTCGTTTCAGTCGAAAGAGAAAGTTATTGTGTTTTCTTCTGCAGCTTCTCTGGTGGATTGCCATTATTAA 903 0.4762 MEQVEVPMEQEEQVVQTMMMKGKRTKRQRLPSPLRLAMAMPSSTSSTTSSFGFDIATSTTPTTTANDDEDLANCLILLAQGGRGPHNNRHNNNHNKKNESLFNVYDCKTCNRSFPSFQALGGHRASHKKPKILSNSTATEHNYHNDPTSTALTLQISNTTSLYGTAATATAAMETTTAATPNSCKTNNNNKVHECSICGAEFTSGQALGGHMRRHRGFLTTSSAATATATATTTTTTTSSSVSGANLNGIDHQETKNNILKLDLNLPAPEDDHHHHKRSFQSKEKVIVFSSAASLVDCHY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271873g00014 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 217 IPR013087 -
Stsc271873g00014 300 Pfam C2H2-type zinc finger 104 130 - -
Stsc271873g00014 300 Pfam C2H2-type zinc finger 192 216 - -
Stsc271873g00014 300 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Stsc271873g00014 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Stsc271873g00014 300 SMART c2h2final6 105 127 IPR013087 -
Stsc271873g00014 300 SMART c2h2final6 193 215 IPR013087 -
Stsc271873g00014 300 ProSitePatterns Zinc finger C2H2 type domain signature. 195 215 IPR013087 -
Stsc271873g00014 300 PANTHER ZINC FINGER PROTEIN ZAT5 60 280 - -
Stsc271873g00014 300 SUPERFAMILY beta-beta-alpha zinc fingers 104 215 IPR036236 -
Stsc271873g00014 300 Gene3D Classic Zinc Finger 169 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271873g00014 Stsc-Chr271873 124541 125443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271873g00014 8 300 C2H2 Transcription Factor Family AT5G04390 36.979 7.32e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc271873g00014 zf-C2H2_6 5.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271873g00014 - - adu:107494043 335.495