Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271872g00028 ATGGAGAAGATGGAACTTGGAGATACAAAGAAGTTGACAGAGGAGCTACTACAAGGTTTGGAAATGGCGAGACAGCTCCAAATTCATCTCCACGTGGCTTCAACTCCCCATGAAACCCGTGACTTGTTGATCCAAAACATCATCTCTGCTTTTGAAAATGCACTCCACATCCTCAAATGGACACCGCCGCCATCCGCGGCTGCTGATCCTTCGCCTTCGCCGTCGCCTTCTCCCCTCGTTGGAATCAGAATGCCCCATGAGTCTCCATCTTTGAACACCGGCAGCCCCCACAGTGAAGAATCCGATAGAGATTTAAGGGATCAAGATCCCAATGCTTCCAGAAAAAGGAAGAGCTTGCCAAGATGGACAAAACAGATTCGAGTTAGCCCCGGAATGGGAGTGGAAGGGCCTCTTGACGATGGATACAGTTGGAGAAAATATGGCCAGAAAGACATCCTTGGAGCCACCTATCCAAGAGGATACTACAGGTGCACACACAGAAATGTTCAAGGATGCATGGCAACAAAGCAAGTGCAAAGATCCGATGAAGATCCCAACGTGTTCGAAATCACATACAGAGGATCACACACCTGCACCTTGGCCTCATCATCATCCAATACTAATAATGCTTCTCTTCTTGCATCAACAACTACTCCAAATAACACAAATAATAATAACAATAATGTTTTGCAAAGCCTTGACCACCACCATCACCAACAACAACAACCACCACCAGCCATGATGAATGAATTGCTCTTGAACCTCAGGGCAGGGTTGAGGGTCCAAACAGAGAATCTAGATTTCAACTTCCCTAATTCCAACCATGTTTTCTCATCACAACCTCAACCCATGCTTGCTGATAATAACTTTCCTTCCTATATGTCCCCTGCTACATCTGGGATAAGTCAATTTTCAATGTCTTCAACTCCTAATAACTTTGCTACTTCTTCTGGGAATCACATCAATGAAATGATTTCTTCTGCTACTGCCGCTGCTACCACCTCTGCTTCAAACTCAAACTCGCCAACCGTTGGATTAGACTTTCCCTTTGACCAATTTGAATTGGACGCTCAAAACAACTTTATGTTTGATAACCCGCGGTTTTTCCCTTAG 1113 0.4501 MEKMELGDTKKLTEELLQGLEMARQLQIHLHVASTPHETRDLLIQNIISAFENALHILKWTPPPSAAADPSPSPSPSPLVGIRMPHESPSLNTGSPHSEESDRDLRDQDPNASRKRKSLPRWTKQIRVSPGMGVEGPLDDGYSWRKYGQKDILGATYPRGYYRCTHRNVQGCMATKQVQRSDEDPNVFEITYRGSHTCTLASSSSNTNNASLLASTTTPNNTNNNNNNVLQSLDHHHHQQQQPPPAMMNELLLNLRAGLRVQTENLDFNFPNSNHVFSSQPQPMLADNNFPSYMSPATSGISQFSMSSTPNNFATSSGNHINEMISSATAAATTSASNSNSPTVGLDFPFDQFELDAQNNFMFDNPRFFP 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271872g00028 370 Gene3D WRKY domain 123 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271872g00028 370 SMART WRKY_cls 138 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271872g00028 370 MobiDBLite consensus disorder prediction 201 244 - -
Stsc271872g00028 370 MobiDBLite consensus disorder prediction 65 79 - -
Stsc271872g00028 370 Pfam WRKY DNA -binding domain 139 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271872g00028 370 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 305 IPR044810 GO:0003700
Stsc271872g00028 370 SUPERFAMILY WRKY DNA-binding domain 137 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271872g00028 370 MobiDBLite consensus disorder prediction 97 116 - -
Stsc271872g00028 370 MobiDBLite consensus disorder prediction 64 133 - -
Stsc271872g00028 370 FunFam WRKY transcription factor 53 124 201 - -
Stsc271872g00028 370 ProSiteProfiles WRKY domain profile. 133 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271872g00028 Stsc-Chr271872 271992 273597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271872g00028 8 273 WRKY Transcription Factor Family AT4G23810 38.621 9.02e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc271872g00028 WRKY 4.9e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271872g00028 - - gmx:100812027 363.614