Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271872g00022 ATGGATGATAACTTATTATCAGATATCTTCCAAGACAAAGACTTTGGCGGAGACGATCTCTTTGCCATCTTGGAAAGCCTCGATGACTTCACTCCAAGTCCAACAAACACTACTGCAGATTTTGCCACCCTTCCTTCTCACAACAACTCATCAACATCCGACCCTGAATCATCATCATTGCCCTCGCCGCAAACCAAAAGACAAAAGCTACTAGTTCCGCCACCACCTTCCCCTAGCGTCGCCGAGGATGGACAACACCGGATGTCTCATATCACGGTGGAGCGCAACCGGAGGAAGCAGATGAACGAGCACTTATCCGTCCTCAGATCCCTCATGCCTTGCTTCTACGTCAAACGAGGTGATCAAGCATCAATAATTGGAGGCGTGGTTGATTACATCAACGAATTGCAACAAGTTCTTCAAGCACTTGAAGCAAAGAAGCAAAGAAAAGTTTACACGGATCATGTTCTAAGCCCTAGGCTCGTCTCAAGCCCAAGGACTTCGCTACCACTAAGCCCACGAAAACCACCCTTGAGCCCTAGGCTAAGCCTGCCCATAAGCCCAAGGACTCCGCAACCGGGTAGCCCATACAGGCCACCCGCGGTGCCCTGCAGGTTGCAGCCCGCCGCCGCATTTTCGCCGGCAGCGTCCATATCAAACTCTGTTGAGCCATCTCCAACGACTTCTTCCGCTTCCTCCATTGTTGATGACATCAACAACGAGCTTGTTGCGAATTCAAAATCTGCAATGGCCGAGGTTGAGGTGAAGTTCTCGGGCCCTCACCTTCTTCTGAAAACGGTGTCGCAGCGAATCCCCGGGCAAGCGTTGAAGATCATATCAGCTCTTGAAGATCTTGCTCTTGAAATTCTTCAAGTTAATATCAGCACTGCTGATGAAACCATGCTTAATTCATTCACTATCAAGATTGGAATTGAATGCCAACTAAGTGCGGAGGAACTAGCCCAACAAATCCAGCAAACATTCTGCTAG 990 0.4909 MDDNLLSDIFQDKDFGGDDLFAILESLDDFTPSPTNTTADFATLPSHNNSSTSDPESSSLPSPQTKRQKLLVPPPPSPSVAEDGQHRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYTDHVLSPRLVSSPRTSLPLSPRKPPLSPRLSLPISPRTPQPGSPYRPPAVPCRLQPAAAFSPAASISNSVEPSPTTSSASSIVDDINNELVANSKSAMAEVEVKFSGPHLLLKTVSQRIPGQALKIISALEDLALEILQVNISTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271872g00022 329 FunFam Transcription factor SPEECHLESS 77 151 - -
Stsc271872g00022 329 MobiDBLite consensus disorder prediction 170 201 - -
Stsc271872g00022 329 MobiDBLite consensus disorder prediction 28 88 - -
Stsc271872g00022 329 PANTHER TRANSCRIPTION FACTOR FAMA 7 328 IPR044283 GO:0003700|GO:0010052
Stsc271872g00022 329 Pfam Helix-loop-helix DNA-binding domain 87 137 IPR011598 GO:0046983
Stsc271872g00022 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 85 136 IPR011598 GO:0046983
Stsc271872g00022 329 MobiDBLite consensus disorder prediction 162 201 - -
Stsc271872g00022 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 161 IPR036638 GO:0046983
Stsc271872g00022 329 SMART finulus 91 142 IPR011598 GO:0046983
Stsc271872g00022 329 CDD bHLH_AtFAMA_like 88 154 - -
Stsc271872g00022 329 MobiDBLite consensus disorder prediction 29 66 - -
Stsc271872g00022 329 Gene3D - 79 163 IPR036638 GO:0046983
Stsc271872g00022 329 Coils Coil 129 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271872g00022 Stsc-Chr271872 251132 254315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271872g00022 10 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.802 1.23e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc271872g00022 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271872g00022 K20558 - rcu:8274388 361.303