Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271872g00008 ATGATTGTGTGCATGTATGAGAAAAATGACGAAAATGCGCTACCCGTTGAGGCCAAGAAAAAAGAAGTGCCTCTGAAGAAGCAATCTTCTGATAGCCAAGAGACTCAGGACAAGAACAAGATTGTGTTCTTTGAAGGATGCAAACTTGCATTTGACTTAGAGGATCTACTGAGAGCTTCTGCTGAGATTCTAGGAAAGGGGACATTCGGCACGACATATAAGGCTTCTCTAGATGAGAATACCACAGTGGTGGTGAAGAGGTTGAAAGAGGTTACAGTTGGGAAAAGAGAATTTGAACAGCAAATGGAAATTGTGGGGAGAATTAAGCATGAAAATGTGGATGCATTAAGGGCATATTACTACTCAAAGGAGGAGAAACTCATAGTATATGATTTCTATCAACAAGGCAGCGTTTCTGCACTATTGCATGGAAGAAGAGGGGAAGGAAGAATCCCTTTAGACTGGGAGAGCCGTCTAAGAATCGCAATAGGCGCGGCAAGAGGCATTGCTCACATCCATGCTCAACATGGAGGGAAACTAGTTCATGGAAACATAAAAGCCTCAAACATTTTCCTCAACTCACAAGGATACGGTTGCGTATCAGACATCGGTTTGGCAATACTGATGAGTCCAATTCCACCACCAGCAACACGCGCTGCCGGCTACCGTGCCCCAGAAGTAACTGACACCAGAAAATCAACACATGCATCTGATGTCTATGCTTTCGGGGTCCTGCTACTTGAGCTTCTAACAGGGAAGTCACCAGTACCTGTTGCTGGAAGTGAGGAAGTTATGCATTTGGTTAGATGGGTGAATTCTGTGGTTAGAGAAGAATGGACTGCAGAGGTGTTTGATGTGGAGCTTCTGAGATATCCGAACATAGAGGAAGAAATGGTAGAGATGCTGCAAATTGGGATGGCTTGTGCCTCAAGAATACCGGATCAGAGACCGAAAATGACAGAGGTGGTGAGAATGATGGAGGAAATTCGTCATGTAAATACTGGAAATGCACCATCCACTGAGTCTAGATCAGAAGTTTCTACCCCAACAAATTATGCACTTGACATGATGATGATGGCTTCCACATCAGTTCCACCACAGTGA 1104 0.4429 MIVCMYEKNDENALPVEAKKKEVPLKKQSSDSQETQDKNKIVFFEGCKLAFDLEDLLRASAEILGKGTFGTTYKASLDENTTVVVKRLKEVTVGKREFEQQMEIVGRIKHENVDALRAYYYSKEEKLIVYDFYQQGSVSALLHGRRGEGRIPLDWESRLRIAIGAARGIAHIHAQHGGKLVHGNIKASNIFLNSQGYGCVSDIGLAILMSPIPPPATRAAGYRAPEVTDTRKSTHASDVYAFGVLLLELLTGKSPVPVAGSEEVMHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACASRIPDQRPKMTEVVRMMEEIRHVNTGNAPSTESRSEVSTPTNYALDMMMMASTSVPPQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271872g00008 367 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 133 340 - -
Stsc271872g00008 367 Gene3D Phosphorylase Kinase; domain 1 24 132 - -
Stsc271872g00008 367 FunFam pollen receptor-like kinase 1 27 132 - -
Stsc271872g00008 367 SUPERFAMILY Protein kinase-like (PK-like) 62 327 IPR011009 -
Stsc271872g00008 367 PANTHER OS05G0588300 PROTEIN 32 338 - -
Stsc271872g00008 367 Pfam Protein tyrosine and serine/threonine kinase 62 325 IPR001245 GO:0004672|GO:0006468
Stsc271872g00008 367 ProSitePatterns Protein kinases ATP-binding region signature. 64 95 IPR017441 GO:0005524
Stsc271872g00008 367 ProSiteProfiles Protein kinase domain profile. 58 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271872g00008 367 Gene3D Transferase(Phosphotransferase) domain 1 134 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271872g00008 Stsc-Chr271872 105111 107910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271872g00008 38 350 Receptor kinase-like Gene Family AT4G23740 66.875 2.64e-160 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc271872g00008 PK_Tyr_Ser-Thr 7.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271872g00008 - - gmx:100813065 547.74