Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271871g00041 ATGGATCTCAATGATCAAACCATTAACACCCTCGTTTCTAACCTCTCCTCCGACTCCCACACCACCTGCCTCGCCGCCCTCCGCCATCTCCGCATTCTCTCCAACCAAGACCCCACCGCCCGTCCCCTCATCTCCGCTGCCGGCGCAATCCCCCACCTCCTCCACGCCCTCTTCTCCTCCTCCCACTCCATCCAGGACAACGCTGCCGCCACCCTCCTCAACCTCTCAATCTCCGACCGCCGCCCACTCCTCTCCACGCCCCATCTTCTCGACGCCATCGCCCACCTCCTCTCCCGCCACGCCACCACTTCCTCCCCCACCGCCGTCCAGTCCGCCGCCGCCACACTCCACTGCCTCCTCTCCCACGTCCCCGAATTCCGCGCCACTGTAGGCGCCAGCCACGACATCCTCCACTCTCTCCTTCGCATAATGGAATCTCCAGATTCGCCAAGGAGATCAGTGAAGGACGCCCTCAAGGCATCATTTGGAATAGCGCTCCATCCGCCAAACCGGGCCATACTGGTCCGACTCGGTGCGGTGTCAGCGCTATTCCATCTGGTAACAAAAGAAAGAAAGAAAAGGATCGGAATAATGGAAGATGCAACTGCGGTTATAGCGCAAATTGCGGGGTGCGAGGAGAGCGAGGAAGCGTTCCGTGAGGCTTCGGGGATTCCGTTGCTGTCGAGTTTGTTAGGGTGTGACGCAAGCAGCTTGAGGACGAAGGAGAATGCAGTTTCAGGTTTGTTGAATTTGGTGAGGTGTAGTGGTAATAAGGAAACGGTTATGGAGGTTAGAGAGAGAGCCGTTGCTACTGTTGAGACCTTAGATGGGATCATCTACGTGCAGGACCACGGTAGCGCCAAAGGGAAGAGCAAGGCTGTGGCTTTATTGAAGATTGTTTTTGATGGTGGAAGCAGCTGTAACAACAACAATTGTAGTGATTTGTATCCCATTGATCCTGACTTGTAG 969 0.5604 MDLNDQTINTLVSNLSSDSHTTCLAALRHLRILSNQDPTARPLISAAGAIPHLLHALFSSSHSIQDNAAATLLNLSISDRRPLLSTPHLLDAIAHLLSRHATTSSPTAVQSAAATLHCLLSHVPEFRATVGASHDILHSLLRIMESPDSPRRSVKDALKASFGIALHPPNRAILVRLGAVSALFHLVTKERKKRIGIMEDATAVIAQIAGCEESEEAFREASGIPLLSSLLGCDASSLRTKENAVSGLLNLVRCSGNKETVMEVRERAVATVETLDGIIYVQDHGSAKGKSKAVALLKIVFDGGSSCNNNNCSDLYPIDPDL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271871g00041 322 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 178 223 IPR000225 GO:0005515
Stsc271871g00041 322 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 48 76 IPR000225 GO:0005515
Stsc271871g00041 322 PANTHER U BOX DOMAIN-CONTAINING 8 298 - -
Stsc271871g00041 322 Gene3D - 3 155 IPR011989 -
Stsc271871g00041 322 Pfam Armadillo/beta-catenin-like repeat 42 76 IPR000225 GO:0005515
Stsc271871g00041 322 SUPERFAMILY ARM repeat 5 275 IPR016024 -
Stsc271871g00041 322 SMART arm_5 37 77 IPR000225 GO:0005515
Stsc271871g00041 322 SMART arm_5 167 210 IPR000225 GO:0005515
Stsc271871g00041 322 SMART arm_5 211 253 IPR000225 GO:0005515
Stsc271871g00041 322 Gene3D - 156 302 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271871g00041 Stsc-Chr271871 299897 301132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271871g00041 8 297 U-box Gene Family AT2G23140 32.082 3.61e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271871g00041 - - gmx:100803111 348.206