Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271871g00035 ATGAGCATGTTAGGGCTGAGAGACTTGGTTTTCATAACTCCAAATCCTTCTTCTCTTAACCAACATCGCCAACAGCAATCGATTCCAACAGAAAACGGTTATTCAACAATCACCAACAACAACAACAACCCTATGAGCGTTGGTTTCGGGATTTTTCCGCTGTTAGCAGCCACACCGTGCGTTCAGGTACACAATAATACTGAGAGCAGCAATGAGGCCATGGAAGATTCTGGAAACATGAGGGAGAAGATGGAGAGCGATGAAAATGGCGGTGAATTTAGGGTTTGTACGGACTGCGGTAACAGAGCGAAGAAAGATTGTGTGTACAGACGGTGCAGAAGTTGTTGCAAAGGCCGTGGCTATGACTGTACAACTCACGTGAAGAGCACGTGGGTCCCTGCTGTAAGGCGCCGCGAGCGCCACGTGGATTGTTCTGGTGATGGTGCTGATGGAGGAGCTCTTAAGAAGATGAAGAACAATAACAATGGGTGTGGAAGTGGTGCCTCTTACTCTCATAGTTCCACCTCTAATAGCTGCTACTCTCAACAAGATGCAAGATTCAAAGAATCATTACCAGGTCATGTTCGTGCACCTGCTGTGTTCAGATGCCATAGGGTCTCAGCTGTTGGAAATGGTGAAAACGAATTTGCATATTTAGCAACGGTTCATATAAGTGGCCATGTCTTCAGGGGATTTCTCTATGACCATGGTGTGGATCCCAAAAATACCATAATGCCCTGCGCTTCAGAACTTCAACTTGGAAACAACTCCATTAGTGGTGGTGGGAAGAACAAGGAATGTTCTTCTGCAATTGGAGTTACAACCAATAATGATAATCTCTATTCTGCTTCTGCTACCTAG 861 0.4553 MSMLGLRDLVFITPNPSSLNQHRQQQSIPTENGYSTITNNNNNPMSVGFGIFPLLAATPCVQVHNNTESSNEAMEDSGNMREKMESDENGGEFRVCTDCGNRAKKDCVYRRCRSCCKGRGYDCTTHVKSTWVPAVRRRERHVDCSGDGADGGALKKMKNNNNGCGSGASYSHSSTSNSCYSQQDARFKESLPGHVRAPAVFRCHRVSAVGNGENEFAYLATVHISGHVFRGFLYDHGVDPKNTIMPCASELQLGNNSISGGGKNKECSSAIGVTTNNDNLYSASAT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271871g00035 286 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 267 IPR007818 GO:0003700|GO:0006355
Stsc271871g00035 286 Pfam Domain of unknown function (DUF702) 95 239 - -
Stsc271871g00035 286 NCBIfam LRP1 C-terminal domain 191 238 IPR006511 -
Stsc271871g00035 286 NCBIfam putative zinc finger domain, LRP1 type 95 137 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271871g00035 Stsc-Chr271871 233110 236970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271871g00035 1 257 C2H2 Transcription Factor Family AT5G12330 36.242 7.22e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc271871g00035 DUF702 1.2e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271871g00035 - - ahf:112784666 418.313