Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271871g00030 ATGACCCAATATGTTTTCTTTCTTCTCTTCATCACTGCATACTCATCATCATCATCACTTGCAAGTAATGAAACTGATTTAGTTGCATTGCTCAAATTCAAGGAATCCATAACCAACGACCCTTCCCAAGTATTGATCTCTTGGAACACTTCCAATAACCACTTTTGCAACTGGCACGGTGTCACATGCGGCCGTCGCGGTCGCCGGAACCAAAGAGTCACCGGACTAGACTTACAAGGCTCTCACTTGCATGGCTTCATATCACCATATCTTGGGAACCTCTCCTTTCTTACACTCTTGAATTTGGGTGGCAATAGCTTCTATGGCCATGTCCCACAAGAACTTGGTCGTTTGTCCCAATTACAAACACTTTTCTTAACCAACAACACCTTAGAAGGGGAGTTTCCAAAGAACTTGACAAATTGTTTTGAGTTAAGGCTCTTGAATCTACAAAACAATCATTTCATTGGCCAAATCCCAATGGAGATTGGATCCCTTACAAAGCTTGAAGGATTTTATGTTGATAAAAACAATCTAACCGGGAAAATCCCCGATTCGATTGCTAATATTTCTTCCCTTTCTGTCCTCTCTATGGCTTATAACAATTTGGAGGGAAATATACCCGATTCAATTTTCAAACTGAAAGTCTTAACGAAGTTGCAAGTTGGAGCCAATAACCTCTCCGGTACATTTCCTTCTGCAATTTATAATTTATCTTCTCTCACTTTTTTATCGATCGCGATGAATCAGTATACTGGTTTTCTTTTATCTAATATGTTCGTCACTCTGTCTAATCTAAAGACAATGTATATTGGCGGGAATCAACTTTCCGGCCGAATCCCGAGTTCCGTCTCAAATGCATCCAAAATCCAAGTGTTTGATATTTATTTGAACCATTTTAGTGGAGAAATCCCTCAACTAGGGAAGCTACAAGATCTTTCTCTATTGAAGTTAGGTGAAAATAACTTCTCTGGAAATCTAGCTGACAAAAAAGATGGTGAGTTCTTAAGAAGTTTGATTAATTGCACCAAACTTTTGATGTTGGATATAGATACCAATAATTTTAGTGGTAACTTACCTAGTTTCATGGGTAATTTGTCCACCACACTCACTAGTGTGTATCTTGGTGGGAATCAAATTCATGGACAAATTCCTAAGGAATTAGGGAACCTAGTCAACTTGATTTTGTTGACCATGGAGAACAACCACTTAACAGGAACCATTCCAACAAGTTTTAGCAAGCTCACAAAGATGCAGTTTATGGCTCTAGAAGAAAACAACTTGTTTGGAGAGATACCTTCTTCCATAAGTAATCTAAGTCAACTATTTAGGTTGGGATTGGGAAGTAACATGTTGTCTGGGAATATTCCTTCAACTCTTGCTAATTGCAAGAACTTACAACAATTATATCTTTCTTATAACAACCTTAGTGGACATATACCTTCATCACTTATGGGACTTTCCTCTTTGTTAATCCTAAATGTGTCACATAATTCTTTAAGTGGTAATCTTCCTGTTGAGGTGGGCAAGCTTAGTAATCTTGGGGTGTTAGATTTGTCTATGAATTTTCTCTCCGGTTCGATCCCCGAATCGATCGGGGAATGTGTGAGCTTGGAGATCCTTGATTTGCATGGTAATTCCTTCAATGGAGGAATTCCACCTTCTTTGGCTTCACTGAAAGTCCTTCAGGTACTAGATTTGTCGCGAAACGATTTGTCCGGAACAATTCCACAAGAACTGCAAAACCTTACTTCCTTACAATACTTGAATGCATCTTTCAACATGTTGGAAGGTGAAGTTCCCAAAAATGGTGTTTTCCAAAACACAAGTGCATTTTCGGTGGCCAACAATAGCAACCTTTGTGGTGGAGTATCAGAACTCAAGCTTCCACCGTGCCGCGGCTTGAAGGATTCGAGCAAGCGAAAACACAACAATTTGAAGATCATTGTTGGGTTAACAACTTCTCTGATTGCAATATTTCTTCTCTTGTCATGTTTCTATGTTATCTACAAGAAACAGAGAAAACAGAGAAGAGAAGAACAACCAAGCAATTATTCGGCGTTTATCGAACTCCCTAAGGTATCTTACAAAGATCTTCACCATGCCACTGATGGTTTCTCAAACAGGAACTTGATTGGTGTTGGGAGTTTTGGTTCAGTGTATAAAGGAATCCTTGAATCTGATTTGGTTGCCATAAAAGTCTTGAATCTTGAAAGGAAAGGAGCTCATAAATCTTTTGTAGCAGAATGCAATGCATTGAGGAATATTCGACATAGGAATCTAGTAAAGATTCTCACATGTTGCACTAGTGTGGATCACAATGGGAATGACTTCAAAGCTTTAGTTCTTGAGTTCATGTCAAACAGAAGCTTAGAAGAATGGCTCCATGGAGACACTACAATAATAAGTGGTTTAGAAGAGCTTAGACCATTGAATCTGAAGGAGAGATTAGATGTCATTAATGGGGTTGCTTCTGCCATGAAATATCTTCATTATGAATGTGTGCAACCAATTATTCATTGTGATTTGAAGCCTAGTAATGTCCTTCTTGATAAGGAAATGGTTGCTCATGTGAGTGATTTTGGGTTGGCAAGAATTGTTTCAGCAATTCAAGGCAACACACATGATCAAACTAGCACAATTGGCATAAAGGGAACTATAGGTTATGCTCCTCCAGAGTATGGAATAAGTTCTAGAGTATCCAAAGAAGGTGATGCATATAGCTTTGGGATTATGCTTTTGGAGATCTTAACTGGAACAAGGCCAACAGAAGAGATATTCAAAGATGGGAACAACTTACACAGATATGTTCAAAATGCATTCCCAATCAAGTTTTTGGAGATAGTTGATCCCTCTCTTCTCCATAACTTGGAACATGATGAATATCCCTCATCAAAAGAATCACAAAGTGGAGATAATAATAACCTTTTGCATTGGCAAAATCTTGATGCCAACAAGAAGTGCTTGTTTTCACTCTTTAAGATTGGACTTGCTTGTTCTTTAGAATCCCCTGAAGAAAGAATGAATATGATTGAAGTCACAAGAGAGCTAAGTTTAATCCATGTTGCTTACAACTGA 3078 0.384 MTQYVFFLLFITAYSSSSSLASNETDLVALLKFKESITNDPSQVLISWNTSNNHFCNWHGVTCGRRGRRNQRVTGLDLQGSHLHGFISPYLGNLSFLTLLNLGGNSFYGHVPQELGRLSQLQTLFLTNNTLEGEFPKNLTNCFELRLLNLQNNHFIGQIPMEIGSLTKLEGFYVDKNNLTGKIPDSIANISSLSVLSMAYNNLEGNIPDSIFKLKVLTKLQVGANNLSGTFPSAIYNLSSLTFLSIAMNQYTGFLLSNMFVTLSNLKTMYIGGNQLSGRIPSSVSNASKIQVFDIYLNHFSGEIPQLGKLQDLSLLKLGENNFSGNLADKKDGEFLRSLINCTKLLMLDIDTNNFSGNLPSFMGNLSTTLTSVYLGGNQIHGQIPKELGNLVNLILLTMENNHLTGTIPTSFSKLTKMQFMALEENNLFGEIPSSISNLSQLFRLGLGSNMLSGNIPSTLANCKNLQQLYLSYNNLSGHIPSSLMGLSSLLILNVSHNSLSGNLPVEVGKLSNLGVLDLSMNFLSGSIPESIGECVSLEILDLHGNSFNGGIPPSLASLKVLQVLDLSRNDLSGTIPQELQNLTSLQYLNASFNMLEGEVPKNGVFQNTSAFSVANNSNLCGGVSELKLPPCRGLKDSSKRKHNNLKIIVGLTTSLIAIFLLLSCFYVIYKKQRKQRREEQPSNYSAFIELPKVSYKDLHHATDGFSNRNLIGVGSFGSVYKGILESDLVAIKVLNLERKGAHKSFVAECNALRNIRHRNLVKILTCCTSVDHNGNDFKALVLEFMSNRSLEEWLHGDTTIISGLEELRPLNLKERLDVINGVASAMKYLHYECVQPIIHCDLKPSNVLLDKEMVAHVSDFGLARIVSAIQGNTHDQTSTIGIKGTIGYAPPEYGISSRVSKEGDAYSFGIMLLEILTGTRPTEEIFKDGNNLHRYVQNAFPIKFLEIVDPSLLHNLEHDEYPSSKESQSGDNNNLLHWQNLDANKKCLFSLFKIGLACSLESPEERMNMIEVTRELSLIHVAYN 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271871g00030 1025 Pfam Leucine rich repeat 441 500 IPR001611 GO:0005515
Stsc271871g00030 1025 Pfam Leucine rich repeat 557 596 IPR001611 GO:0005515
Stsc271871g00030 1025 SUPERFAMILY L domain-like 368 622 - -
Stsc271871g00030 1025 Gene3D Ribonuclease Inhibitor 23 186 IPR032675 -
Stsc271871g00030 1025 Gene3D Ribonuclease Inhibitor 332 633 IPR032675 -
Stsc271871g00030 1025 SMART LRR_typ_2 263 287 IPR003591 -
Stsc271871g00030 1025 SMART LRR_typ_2 583 608 IPR003591 -
Stsc271871g00030 1025 SMART LRR_typ_2 391 414 IPR003591 -
Stsc271871g00030 1025 SMART LRR_typ_2 559 582 IPR003591 -
Stsc271871g00030 1025 SMART LRR_typ_2 118 142 IPR003591 -
Stsc271871g00030 1025 SMART LRR_typ_2 190 214 IPR003591 -
Stsc271871g00030 1025 SMART LRR_typ_2 463 487 IPR003591 -
Stsc271871g00030 1025 SMART LRR_typ_2 511 535 IPR003591 -
Stsc271871g00030 1025 Pfam Protein kinase domain 708 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271871g00030 1025 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 786 1025 - -
Stsc271871g00030 1025 FunFam LRR receptor-like serine/threonine-protein kinase EFR 676 785 - -
Stsc271871g00030 1025 FunFam Leucine-rich repeat receptor protein kinase EMS1 159 258 - -
Stsc271871g00030 1025 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Stsc271871g00030 1025 PANTHER OS04G0122200 PROTEIN 213 1006 - -
Stsc271871g00030 1025 ProSiteProfiles Protein kinase domain profile. 706 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271871g00030 1025 Gene3D Phosphorylase Kinase; domain 1 688 785 - -
Stsc271871g00030 1025 Gene3D Ribonuclease Inhibitor 189 331 IPR032675 -
Stsc271871g00030 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 838 850 IPR008271 GO:0004672|GO:0006468
Stsc271871g00030 1025 Gene3D Transferase(Phosphotransferase) domain 1 786 1024 - -
Stsc271871g00030 1025 SMART serkin_6 706 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271871g00030 1025 FunFam LRR receptor-like serine/threonine-protein kinase EFR 331 638 - -
Stsc271871g00030 1025 SUPERFAMILY L domain-like 23 327 - -
Stsc271871g00030 1025 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 25 140 - -
Stsc271871g00030 1025 SUPERFAMILY Protein kinase-like (PK-like) 681 1018 IPR011009 -
Stsc271871g00030 1025 ProSitePatterns Protein kinases ATP-binding region signature. 712 733 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271871g00030 Stsc-Chr271871 212070 215686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271871g00030 22 1017 Receptor kinase-like Gene Family AT3G47570 43.707 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc271871g00030 Pkinase 6.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271871g00030 - - qsa:O6P43_025027 1046.19