Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271871g00019 ATGGGTTTGGCTGCAGAAGCACAGTTTCATGTTCTGGCTGTTGATGATAGTCTTATTGACAGAATCTTGATTGAAAGACTCCTCAAAACTTCTTCATTTCATGTTACTGCAGTGGACTCAGGAAGTAAGGCTTTAAAATTTCTTGGATTGGTTGAAGAAGAGCAGAGGAATGAAGAGCCTTCCTTTGTTTCTCAAAAATCTCATAATCAGGATATAGATGTGAACCTGATCATAACTGATTATTGTATGCCAGAAATGACTGGCTATGATCTTCTCAGAAAAATCAAGGAATCAAAATCTCTTAAAGATATACCAGTTGTGATTATGTCCTCAGAGAATGTCCCATCAAGGATCAATAGATGCTTAGAAGAAGGAGCTGAAGAATTCTTTTTGAAACCAGTTCAACAGTCAGATGTGAACAAGCTGAGGCCCCATTTGTTGAAATCAAAAGTTAAGGAAGTGGGAGAAGAAGACCAAGTCATCAACCTCAGTAGAAACGACATAAAAGAAATTTTAGCCTAA 522 0.3736 MGLAAEAQFHVLAVDDSLIDRILIERLLKTSSFHVTAVDSGSKALKFLGLVEEEQRNEEPSFVSQKSHNQDIDVNLIITDYCMPEMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQSDVNKLRPHLLKSKVKEVGEEDQVINLSRNDIKEILA 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271871g00019 173 Gene3D - 4 157 - -
Stsc271871g00019 173 SMART REC_2 9 143 IPR001789 GO:0000160
Stsc271871g00019 173 SUPERFAMILY CheY-like 9 142 IPR011006 -
Stsc271871g00019 173 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 151 IPR045279 GO:0009736
Stsc271871g00019 173 ProSiteProfiles Response regulatory domain profile. 10 147 IPR001789 GO:0000160
Stsc271871g00019 173 Pfam Response regulator receiver domain 11 139 IPR001789 GO:0000160
Stsc271871g00019 173 CDD REC_typeA_ARR 11 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271871g00019 Stsc-Chr271871 144591 145868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271871g00019 1 152 Response Regulator Gene Family AT3G57040 68.421 6.91e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc271871g00019 Response_reg 5.5e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271871g00019 K14492 - gmx:100818762 270.781