LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271871g00014	ATGTCTGTCCAGCATGGAAATTCTGAAGTAAACTCAGGATCAACAGGAGTTTGCCTTTTTGATCTCTTCTGCTCTGAAACACCAAGTTTGAATTCCCAAAGTCAAAGAAACCAATGGCTATACCCTGTATCTCCACGAGAAAGGCTCGACAGTCTGATGCGTCAAGCGGGGAACAAGTTCTGCGCTGATTGTGGATCATCAGAGCCAAAATGGGCGTCTTCAAGTCTCGGAGTATTTATTTGCATCCAGTGTTCTGGCATACATAGAAGCCTAGGAGTCCATATATCGAAGGTTCTATCGCTGAAACTAGATGAATGGACAGACGAACAAGTTGATGAATTGGTGAGATTGGGTGGAAATACAGTAATCAATAAGAGGTATGAAGCTTGTATCCCAAATAGCATTAAAAAACCGAAACCAAATTCTTCGATCGAGGAGCGTGCAGATTATATCAGAAGAAAATATGAGCTGCTACAGTTTTTGGATTCCGAGAAAAATTTGCAATGCACCTTTCCACCATCTCAACAAAGATATTTAACTTGCTCCCCAAGCAACTCATCTTCCTATGGGTTTCCTCTGGACAAAAGACATTACGAAAAGCAAACAACGAAAGCTCGCATTGGGACCGCACTCCGACACAGTTGGGGAAGGAAGGAATCAGAGCATAAGATTTCAAAGAAAAGTCACTCAGTGGCAGGTATGATTCAATTCGTCGGGTTGATCAAGGTTAATGTCGTTAAAGGCACTAACCTGGCTATCCGAGATGTTGTGACTAGTGACCCTTATGTCATGCTTTCTCTTGGTCACCAATCGGTGAAGACTCGTGTCATAAAGAACAATTTGAATCCGGTTTGGAACGAAAGTTTAATGCTCTCAATTCCGGAGAACGTTCCTCCTCTTAAAGTGGTTGTGTATGACAAGGATACTTTCTCGACCGATGATTTCATGGGCGAGGCTGAAATAGACATTCAACCTCTAGTAACAGCCGCGAAGGCATACGAGAAATCTTCGATCAACGAGTCAATGCAGCTCGGGAAATGGGTGGCAAGCGGCGAAAACACTCTTGTTAAAGATGGTATCATCACCCTGGAAGAAGGGAAGGTCAAACAAGAGGTACAATTGAGGTTACAGAAGGTGGAGAGAGGAGTTTTAGACATTGAACTTGAATGTCTTCCTCTGACTCAATAG	1188	0.431	MSVQHGNSEVNSGSTGVCLFDLFCSETPSLNSQSQRNQWLYPVSPRERLDSLMRQAGNKFCADCGSSEPKWASSSLGVFICIQCSGIHRSLGVHISKVLSLKLDEWTDEQVDELVRLGGNTVINKRYEACIPNSIKKPKPNSSIEERADYIRRKYELLQFLDSEKNLQCTFPPSQQRYLTCSPSNSSSYGFPLDKRHYEKQTTKARIGTALRHSWGRKESEHKISKKSHSVAGMIQFVGLIKVNVVKGTNLAIRDVVTSDPYVMLSLGHQSVKTRVIKNNLNPVWNESLMLSIPENVPPLKVVVYDKDTFSTDDFMGEAEIDIQPLVTAAKAYEKSSINESMQLGKWVASGENTLVKDGIITLEEGKVKQEVQLRLQKVERGVLDIELECLPLTQ	395

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc271871g00014	395	CDD	C2_ArfGAP	238	382	-	-
	Stsc271871g00014	395	Gene3D	Arf GTPase activating protein	30	169	IPR038508	-
	Stsc271871g00014	395	PRINTS	HIV Rev interacting protein signature	77	94	IPR001164	GO:0005096
	Stsc271871g00014	395	PRINTS	HIV Rev interacting protein signature	98	119	IPR001164	GO:0005096
	Stsc271871g00014	395	PRINTS	HIV Rev interacting protein signature	58	77	IPR001164	GO:0005096
	Stsc271871g00014	395	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	237	330	IPR035892	-
	Stsc271871g00014	395	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	43	395	IPR044518	GO:0005096\|GO:0005543
	Stsc271871g00014	395	SUPERFAMILY	ArfGap/RecO-like zinc finger	46	161	IPR037278	-
	Stsc271871g00014	395	ProSiteProfiles	C2 domain profile.	218	337	IPR000008	-
	Stsc271871g00014	395	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	46	168	IPR001164	GO:0005096
	Stsc271871g00014	395	CDD	ArfGap	49	155	-	-
	Stsc271871g00014	395	Pfam	Putative GTPase activating protein for Arf	48	162	IPR001164	GO:0005096
	Stsc271871g00014	395	Gene3D	C2 domain	237	387	IPR035892	-
	Stsc271871g00014	395	SMART	arf_gap_3	47	168	IPR001164	GO:0005096
	Stsc271871g00014	395	Pfam	C2 domain	240	329	IPR000008	-
	Stsc271871g00014	395	FunFam	stromal membrane-associated protein 1 isoform X1	31	166	-	-
	Stsc271871g00014	395	SMART	C2_3c	240	335	IPR000008	-
	Stsc271871g00014	395	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	237	395	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271871g00014	Stsc-Chr271871	94370	99134	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271871g00014	42	395	C2H2 Transcription Factor Family	AT4G05330	46.893	9.32e-116	339

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271871g00014	K12486		-	gmx:100799376	610.527