Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271870g00048 ATGGCTGATATTGTCATCTCCATAGCTGCCAAGATATCAGAATATGTGGTGGATTTAGCGATTCGTCATGCACAGTATCTGTTTTGTGTCAGAAGATTCATTAAGAATCTTGAAAAAGAAAAGCAGAAGCTGATTTCAACTCTAGGCAGAGTGCAGGAAAGAGTTGAAGCAACTTACAAAACAGAACAAGTCAAAGATTCTGTTCTAAAGTGGATCAACGAAGCCGAAAAGCTTGTAGAAGAGGTGAAGAATCTTGAAACAGAAAGAGACTCATGGAAGTTGTTTCAAGGGGCAATTGAGTATTTATATCCTGGAAACATTGTTTACTTCAAGTCCACGCGAAACGCTTCGGATCAAATTTTGGAGGCGTTGCGAGATGATAGTATCAATTTGATTGGACTGTTTGGAATGGGAGGTTCTGGTAAGACAATATTGGTAAAAGCAGTTGGTAACAAGACCAAGGCTATGAATCTTTTCGACCGAGTTGTGCTTGCCACTGTGTCACAAATTCCAGATATCAAGGAGATTCAGAAGGAAATTGCTGAATTGATGGGGCTGAAATTTTCTGAAGAAAACAAAGCATCAAGAGCAATAAGAATATCTCTGGGGCTGCAAAGTAAAGAGAGAATTCTTGTGATCTTGGATGGTGTCTGGGCTAAGCTTAAGCTTGAAGACATTGGAATTCCTTGTGACGAGGGCAACCAAAGCAGCTGCAAGGTCCTTTTCACCACGCGTCTGCGTGGAGTTTGCACCTTGATGAACTGTCAAAGAGAGATTCCTTTAGATCTCTTGTCTGAAGAGGAAGCTTGGATGTTTTTCAAGGAACATTCAGGAATAGGTGACAATTCGCCATCCGAGCTATTAAAGGTAGCATCAAATGTTGCTATGGAATGTAAAAGCTTACCAATCGAGATTGAAGCAGTGGGATCTTCCTTGAAAAAGAAGCCTATTGAGGTGTGGAAATCAGCATTATACAGTCTGAAACATTCAAAGCCAATGGATGTTGAAGATGGAGTGAGAGATGCTTTCTCCTGCATTGAATTAAGCTACAATCATTTGAGAAGCAAAAGAGACGAGTTGATGTTCTTGATGTGTAGTCTGTTTCCAGAAGATCATGAGATCTTTGTTGAGGATTTGATCAGATATGGAGTGGGATTAGGCATATGTGGCAAAGTCGAATCGATTGACATGGCAAGGAATCAGTTGGGAGCTATATCATCATGGAACAAGAAAACGAACCGGATTGCTGCTCAAGTCACTGCTCCAAAGCTTGAGTTTCTATTGCTGAGTACTAGAATGTCCTTGGATATGTCAAGTGCATCTTTTGAAGGCCTTAAAGAGATCAAGGTTATGGCAATTATGAATGATGCTTATAGGACTTTACTAAAGCTCGAGGTTCTTGATTTGCGAGCTTGTCGCTTCAAACAAATTCCGAAGGAAATTGAGAAACTGAGCAAATTGAAGGTGCTGGATTTGTCAGGCTGTGAAGTTCTAGAAAGCTATAATTCTGAAGCAATTGGAAATTGTGAACAGCTTGAAGAGTTCTATGTTTCTGGACCTTCCTTCCAAAGGGATGATAAATTCATATTTCCATGTCAAACCTTTCTGGATGATGTTACATCTCCAAATCTGCAGAGGTATGTATTAGAGCTTGGACCCTTACAAACTTATGGCCATGGCATCAACGAGAATTCGAGTGTGAGAGCTCTAAGCTTGAAAGAGTTTGATATGTCTAAATTTGGTGCATCTAAGATGAATCTTCTGCAAAGATCTGAGGATATTTATTTGAACCGGCTTCGCGGAGGATGTAAGAATATTGCTCCAGAGTTTGTTCAAGCTGCAGGAAGCATGAATGATTTGACTAAGCTCCGGCTTCTTGCTTGTTCGGAGATAGAATGCATAATAGATTCAACTTCTGCTGGCAGTTATTTTCAGTTAGATGCTTTGATCCCGGGTTTAGCCAAGTTAGAGCTGGAGGAAATGGAAAACTTGAAAGAACTTTGCCATGGTTCACCTATGCATGCTCTTAGCTTCTTTGAGAAGTTAGAAGAACTCTACATAAGGAAAGGACTTTATCAACCTACCGTTGCCATCAGCTGCGCTGCAGTTGTGCTATTCTCTATGTCTGCTGCCAAAAGTCTAGAGCAATTAGAAGAGCTATCAATAGCAGATTGCAAGGATCTAAGGTGCATAATTTCGGATGAAGACCATAATGGTAATGAGGACATATCTCAAGCTATTAGCAACTCACAATCAATGCTCCCAAATTTGAAGAAACTCTACATTCATTATTGTCCAAAGTTAGAATTTGTGCTCCCAAGATTCTGTGTTGGCCTTGAGAAACTGCAAGAGATAGATATTTTTAAGGCCTCAGAGTTGAGATATGTATTTGGCCATGAATATCAAAATGAGATCCAAACCAAGGTTCCCAATTTGGAATCACTCAAACTCCAGAACCTCGCGAATCTTGTTCGGATATGCAGGGGAAACAGTCAGCCTTTGTGGCCATCTTTGAGGGAGCTAAGATGTGTTAACTGTCCAAAATTGAACACATCTTGTATCAATCTTATGGTTAGATCAACAATGAAACTGCAGCATCTTAATAAGGGAGATTCCCTTGAGGATGATCAGGGAAAAAAATTGGCCTCAAAATTAGAACAAGTCGAATTTCGAGGCTTCTCCGAATTGAGGTTCATATGGTGTGATCCTACTAACAGACAGATTTTGAGCCTTCAATATCTTCAATATTTAAAGGTGGACGGCTGCGCGAAATTGAAATCCATCTTCTCGGTTGCGATTCTTAGAAGCCTACAGGAGCTGACATCGCTTGTTATACAAGGCTGCAATGAACTTGAAGAGATCATTTCAGAGAATGAAGAACTGCATCATGATATGTCAAATACTACTAAAGCAGTGTGTTTTCCAAAGTTAAGAAACTTAACTGTCAAGAATTGCAACAAATTAAAAAGCATTCTCTCTGTTTCTATGCTTGGAATCCCTCCTCAACTGAGTTATCTGCACATTTCAGATGCTGCTGAACTTGTACAAGTTTTCAGGAATACTAGTGAGAAGATTGTGTTTCCAAATCTCAGAGAAATGAAGCTGAATAAACTACCATGTCTAGTGGAAATTTGCAAAGGATTTGAACTATTACAGCCAATGAAAGCAACGAAGATCATAATAGATCAATGTCCAAATATTACTTCAATTACTAAAGCAACTTAA 3225 0.396 MADIVISIAAKISEYVVDLAIRHAQYLFCVRRFIKNLEKEKQKLISTLGRVQERVEATYKTEQVKDSVLKWINEAEKLVEEVKNLETERDSWKLFQGAIEYLYPGNIVYFKSTRNASDQILEALRDDSINLIGLFGMGGSGKTILVKAVGNKTKAMNLFDRVVLATVSQIPDIKEIQKEIAELMGLKFSEENKASRAIRISLGLQSKERILVILDGVWAKLKLEDIGIPCDEGNQSSCKVLFTTRLRGVCTLMNCQREIPLDLLSEEEAWMFFKEHSGIGDNSPSELLKVASNVAMECKSLPIEIEAVGSSLKKKPIEVWKSALYSLKHSKPMDVEDGVRDAFSCIELSYNHLRSKRDELMFLMCSLFPEDHEIFVEDLIRYGVGLGICGKVESIDMARNQLGAISSWNKKTNRIAAQVTAPKLEFLLLSTRMSLDMSSASFEGLKEIKVMAIMNDAYRTLLKLEVLDLRACRFKQIPKEIEKLSKLKVLDLSGCEVLESYNSEAIGNCEQLEEFYVSGPSFQRDDKFIFPCQTFLDDVTSPNLQRYVLELGPLQTYGHGINENSSVRALSLKEFDMSKFGASKMNLLQRSEDIYLNRLRGGCKNIAPEFVQAAGSMNDLTKLRLLACSEIECIIDSTSAGSYFQLDALIPGLAKLELEEMENLKELCHGSPMHALSFFEKLEELYIRKGLYQPTVAISCAAVVLFSMSAAKSLEQLEELSIADCKDLRCIISDEDHNGNEDISQAISNSQSMLPNLKKLYIHYCPKLEFVLPRFCVGLEKLQEIDIFKASELRYVFGHEYQNEIQTKVPNLESLKLQNLANLVRICRGNSQPLWPSLRELRCVNCPKLNTSCINLMVRSTMKLQHLNKGDSLEDDQGKKLASKLEQVEFRGFSELRFIWCDPTNRQILSLQYLQYLKVDGCAKLKSIFSVAILRSLQELTSLVIQGCNELEEIISENEELHHDMSNTTKAVCFPKLRNLTVKNCNKLKSILSVSMLGIPPQLSYLHISDAAELVQVFRNTSEKIVFPNLREMKLNKLPCLVEICKGFELLQPMKATKIIIDQCPNITSITKAT 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271870g00048 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 355 IPR027417 -
Stsc271870g00048 1074 Gene3D Ribonuclease Inhibitor 855 1024 IPR032675 -
Stsc271870g00048 1074 Gene3D Ribonuclease Inhibitor 527 803 IPR032675 -
Stsc271870g00048 1074 Pfam NB-ARC domain 117 350 IPR002182 GO:0043531
Stsc271870g00048 1074 SUPERFAMILY L domain-like 389 1044 - -
Stsc271870g00048 1074 Gene3D - 102 259 IPR027417 -
Stsc271870g00048 1074 PRINTS Disease resistance protein signature 131 146 - -
Stsc271870g00048 1074 PRINTS Disease resistance protein signature 482 498 - -
Stsc271870g00048 1074 PRINTS Disease resistance protein signature 298 312 - -
Stsc271870g00048 1074 PRINTS Disease resistance protein signature 204 218 - -
Stsc271870g00048 1074 Gene3D - 263 353 IPR042197 -
Stsc271870g00048 1074 Coils Coil 68 88 - -
Stsc271870g00048 1074 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 856 991 - -
Stsc271870g00048 1074 FunFam Probable disease resistance protein At1g61300 111 258 - -
Stsc271870g00048 1074 Coils Coil 34 54 - -
Stsc271870g00048 1074 Gene3D Ribonuclease Inhibitor 382 526 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271870g00048 Stsc-Chr271870 281423 285245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271870g00048 129 346 WRKY Transcription Factor Family AT5G45050 25.764 1.30e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271870g00048 - - lang:109341976 1167.14