Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271870g00039 ATGCGGAGACCCAAATCAAAAGAGTTCCGGAAGCAACAGCGAATTTCTGAGGAGAGCGAGATTGAGCTTCTCAAATCATGGATCGAAACCCAGAAGCCAGAGTCGGGTTCGAACCCACTGTCCCTTCCTCCTCTTCCCAAAAACGCGCCCGTGGGGCGCGTAGACGACACCGCGTTTTCGCGGTACGCTGGTGTTGGTAGGTTCGAGCAGTTGCCGCTTTCGAAGAAGACGAAGGATGGGTTGAGAGCGGCGAAGTTCGTGTCGATGACGGAGATTCAGAGAGCTTCGCTGCCACACGCTCTTTGTGGCCGCGATATTCTCGGCGCCGCCAAAACGGGTTCCGGAAAAACGCTTGCTTTCATCATCCCTGTGTTAGAAAAATTGTATAGAGAGAGATGGGGACCTGAGGATGGTGTCGGGAGCATCATAATATCTCCTACAAGGGAACTAGCTGGTCAGCTGTTTGATGTGTTGAAGTCTGTTGGCAAGTTCCATAATTTCAGTGCTGGTCTTCTCATTGGTGGTCGCAAGGATGTTGACATGGAGAAGGAACGAGTCCATGAGCTCAACATATTGATTTGCACTCCTGGTCGCTTACTGCAACACATGGATGAGACTCCCAATTTTGAATGTTCGCAGATGCAGGTTTTGGTACTAGATGAGGCCGATCGTATTCTCGACAGTGGATTCAAGAGAGAACTAAATGCAATCATTTCACAACTACCAAAGCGTAGACAAACCATGCTTTTCTCAGCAACCCAGACAAAGTCGATTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCAGAGTATCTCAGTGTGCATGAGGAGTCTGTGACTGCCACTCCTACTCTCTTGAAGCAAATTGTGATGGAGGTTGCACTTGACCAAAAGTTAAACATGCTGTGGAGTTTCATAAAGACACACCTTCAGTCGAAAATACTTGTTTTTCTTTCAAGTTGTAAGCAGGTAAAATTCGTGTTTGAAGCATTTAAGAAACTACACCCTGGCATTCCGTTGAAGTGTCTTCATGGGAGGATGAAGCAGGAAAGAAGAATGGCAATCTATTCCGAATTTTGTGAGAAGCGCTCTGTTCTCTTTTCTACTGATGTGGCTGCAAGAGGCCTTGATTTTAATAAAGCAGTTGATTGGGTTGTTCAGGTGGATTGTCCTGAGTCTGTAGCATCATACATACACAGAGTAGGCCGTACAGCTCGTTATAAATCTGTTGGAAAGTCAGTTTTATTTCTGATGCCCTCAGAAATGCAAATGTTTGAGAAGTTAAAAGCAGCGAAAGTTCCTGTTCACTATAATAAGCCAAAGAAAGAATTGGTGCAACCGGTTTCAACTTTGTTGGCGTCTTTACTGGTCAAGTATCCAGATCTGCAGCATCGGGCTCAAAGAGCCTTTGTCACATATTTGAGATCCATACATATACAAAAGGATAAAGAGATATTTGATGTTATGAAACTACCAATTGATGCATATTCAGCATCATTAGGCTTACCAATGACCCCAAAAATCCGTTTTCTAAACCAGAAAATTAAATCTAAAGCTGCATTGGCAAAAGCAATTTTAGATGAACCAGAAAATCAAGAAGAGAAAAATGGATTGGAGATATCCAAAAAGAATCTAGACTCAAGTGATTCTGAGGTTGAAGAAACAGAAAATGATCTTCTTTTGGCTGCTGATAACACTAAGGAAGGCGAAGGAAAGGCATCTGAAGACACAGAAATCATGCCTGCAACTCGTATATTGAAGAAAAAGAAGCTTAAGATCAATGTACATCGGCCACTAGGGACTAGGGTTGTATTCGATGATGAAGGCCACACACTTCCTCCTCTAGCCAGGATTGCTGATACACAGAGTGGCAAGGAATCCTTGTTGCTTGACCCAGAACAAAAAGCTGAATACTATAGAAAGATGCGTGAGGATTTGAAGAAGGCAGACAAGGAAGACAAGCTTCTGGAGCGACAGCGGCGTAGAGAAAAAAGAATCAAACAGAAGATGAAGTGGAAGGAAGGAAACATGGATGAAGATGACGAGGATGATGTTTCTGGGTCCGAATCAGATAAAGCCACGGCAAGACCGAATAAGAAGAGTAAAGTATATTTTGACAGTGACAGTGATGATGGTGAAAGAAATGAAGTGACAGGGAAGGGAGCCATTGGTGCTGGCTCTGTTAGTTTGGAGGAGCAAGAAGCACTAGCTTTGAAATTATTGAATTCCATGCACTCATAG 2241 0.4373 MRRPKSKEFRKQQRISEESEIELLKSWIETQKPESGSNPLSLPPLPKNAPVGRVDDTAFSRYAGVGRFEQLPLSKKTKDGLRAAKFVSMTEIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQLFDVLKSVGKFHNFSAGLLIGGRKDVDMEKERVHELNILICTPGRLLQHMDETPNFECSQMQVLVLDEADRILDSGFKRELNAIISQLPKRRQTMLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMEVALDQKLNMLWSFIKTHLQSKILVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPESVASYIHRVGRTARYKSVGKSVLFLMPSEMQMFEKLKAAKVPVHYNKPKKELVQPVSTLLASLLVKYPDLQHRAQRAFVTYLRSIHIQKDKEIFDVMKLPIDAYSASLGLPMTPKIRFLNQKIKSKAALAKAILDEPENQEEKNGLEISKKNLDSSDSEVEETENDLLLAADNTKEGEGKASEDTEIMPATRILKKKKLKINVHRPLGTRVVFDDEGHTLPPLARIADTQSGKESLLLDPEQKAEYYRKMREDLKKADKEDKLLERQRRREKRIKQKMKWKEGNMDEDDEDDVSGSESDKATARPNKKSKVYFDSDSDDGERNEVTGKGAIGAGSVSLEEQEALALKLLNSMHS 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271870g00039 746 SMART ultradead3 85 289 IPR014001 -
Stsc271870g00039 746 SMART helicmild6 325 408 IPR001650 -
Stsc271870g00039 746 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Stsc271870g00039 746 Pfam Domain of unknown function (DUF4217) 452 508 IPR025313 -
Stsc271870g00039 746 PANTHER RNA HELICASE 65 557 - -
Stsc271870g00039 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 274 IPR027417 -
Stsc271870g00039 746 MobiDBLite consensus disorder prediction 531 550 - -
Stsc271870g00039 746 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Stsc271870g00039 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 423 IPR027417 -
Stsc271870g00039 746 MobiDBLite consensus disorder prediction 648 729 - -
Stsc271870g00039 746 Gene3D - 54 278 IPR027417 -
Stsc271870g00039 746 Coils Coil 538 558 - -
Stsc271870g00039 746 MobiDBLite consensus disorder prediction 531 555 - -
Stsc271870g00039 746 CDD DEADc_DDX10 77 275 - -
Stsc271870g00039 746 MobiDBLite consensus disorder prediction 688 717 - -
Stsc271870g00039 746 Coils Coil 639 659 - -
Stsc271870g00039 746 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Stsc271870g00039 746 CDD SF2_C_DEAD 286 417 - -
Stsc271870g00039 746 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 452 IPR001650 -
Stsc271870g00039 746 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Stsc271870g00039 746 SMART DUF4217_3 447 510 IPR025313 -
Stsc271870g00039 746 Gene3D - 284 528 IPR027417 -
Stsc271870g00039 746 Pfam DEAD/DEAH box helicase 90 260 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271870g00039 Stsc-Chr271870 227985 232020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271870g00039 93 452 Eukaryotic Initiation Factors Gene Family AT3G19760 28.219 6.58e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271870g00039 K14776 - gmx:100792106 1189.87