Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271870g00028 ATGACAAAGTGGTTTTGTGAAATGAGAGAAATAAGAGTTGCAAAAAGGTGCAAGGAGGTTTTCTCACTGTGTGATTTGTCCTGTTTTGTTAAGCTATTCATGGCAGCCATGGAGACAATTCTATATGCTGCATTCACAGTCATTCTAGCACTTGGAGGTTCAATAATAGGAACAATAGCAGGAGGAATGAAAGGGCAAACCACCGAAGCTGGTTTTCTTGATGGAGCTGGAAAAGGAGCAGTTGCAGGAGCCATTGCTGCCATTGAATTGTTGAACTTTGGAGCCATTGATGACCCTTTAACCAAGGCACTGCTGAGAAGTTTATTAAATGGGAAAGTCTTCATGGAATGGATATGTCCAGCTGTTTCACAAGCTTATCACTTGCATATAAACACTTCAGAAACAAGTTCTTCATACAGTGAAGTATCAGAAATTTATGATAACAAAGGGGTTAAAGGGATGGCAAAGAGTGTAATTCTGAAGTTTCCTTCTCTGAAATTCAAATCCAAGAAAATGTATAACATTTCAAGCTGCTCAATTTGTTTCCAGGATTTTGAGGAAGAAGAATTGATTAGGATACTTCCAAAATGTGGGCACATTTTTCATTTACAATGTATAGATAAATGGTTAATCCAACAAGGATCATGCCCTATGTGCAGAACTCATGTTTCTAATCACATTCATGAATTGTAG 693 0.3781 MTKWFCEMREIRVAKRCKEVFSLCDLSCFVKLFMAAMETILYAAFTVILALGGSIIGTIAGGMKGQTTEAGFLDGAGKGAVAGAIAAIELLNFGAIDDPLTKALLRSLLNGKVFMEWICPAVSQAYHLHINTSETSSSYSEVSEIYDNKGVKGMAKSVILKFPSLKFKSKKMYNISSCSICFQDFEEEELIRILPKCGHIFHLQCIDKWLIQQGSCPMCRTHVSNHIHEL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271870g00028 230 ProSiteProfiles Zinc finger RING-type profile. 178 220 IPR001841 -
Stsc271870g00028 230 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 28 223 IPR044523 -
Stsc271870g00028 230 CDD RING-H2_EL5-like 177 220 - -
Stsc271870g00028 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 226 IPR013083 -
Stsc271870g00028 230 Pfam Ring finger domain 177 220 IPR001841 -
Stsc271870g00028 230 SUPERFAMILY RING/U-box 161 225 - -
Stsc271870g00028 230 SMART ring_2 178 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271870g00028 Stsc-Chr271870 154365 156357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271870g00028 5 223 C3H Transcription Factor Family AT5G66070 33.624 1.86e-38 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271870g00028 - K19041 gmx:100305612 261.151