Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271870g00027 ATGCAGCATTTGAGTGGACAACCAAACATTGTTGAATTCAAAGGTGCTTATGAGGACAAGCATTCAGTTCATGTTGTCATGGAATTGTGTGCAGGTGGTGAGCTTTTCGATAGGATCATTGCAAAGGGACATTACAGTGAAAGAGCTGCAGCTTCAATATGCAGACAGATTGTGAATGTTGTTCATATTTGCCATTTCATGGGTGTGATGCATAGAGATCTTAAGCCAGAGAATTTCTTGTTGTCCAGTAAGGATGACAAGGCACTTCTCAAGGCCACAGATTTCGGCCTCTCGGTATTCATTGATGAAGGAAAGGTGTATCGCGATATAGTTGGGAGCGCTTATTATGTAGCCCCGGAAGTTCTACGTCGTAGATACGGAAAGGAAATAGATGTATGGAGTGCAGGAGTTATATTATATATCTTACTCAGTGGTGTGCCTCCATTCTGGGCAGAGACCGAAAAGGGAATATTTGATGCCATATTGGAAGGCCATATTGATTTCGAAAGCGCCCCGTGGCCAAGTATATCGAATAGTGCTAAGGACCTCGTTCGTAAGATGCTTACACAGGACCCGAAGAAACGCATCACTTCTGCTCAGGTTCTTGAGCACCCATGGATTAGAGAAGGTGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTTAGAGCAATGAATAAACTAAAGAAACTTGCACTCAAGGTCATAGCTGAAAATCTTTCTGAAGAAGAGATCCAAGGTTTAAAGGCAATGTTTACAAATATCGACACTGACAACAGCGGTTCAATCACATATGAGGAACTAAGGGCCGGATTGCAACGACTTGGATCGAAACTCACTGAAGCCGAAGTTCGGCAGCTGATGGATGCTGCTGATGTAGATGGAAACGGAAGTATCGACTACATCGAATTCATCACTGCTACAATGCATAGACATAGGTTAGAAAGAGATGAGCATCTTTACAAGGCCTTCCAGTATTTTGATAAAGACAACAGCGGGTTTATCACAAGAGATGAACTAGAATCAGCCATGAAGGAATATGGTATGGGTGATGAAGCCACAATCAGGGAAATCATATCAGAAGTTGATACAGATAATGATGGTAGAATAAACTATGAAGAATTTGTTGCAATGATGAGGAGTGGAACAACTCATCAAGGAGGAAAACTATTCTAA 1197 0.4194 MQHLSGQPNIVEFKGAYEDKHSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDDKALLKATDFGLSVFIDEGKVYRDIVGSAYYVAPEVLRRRYGKEIDVWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESAPWPSISNSAKDLVRKMLTQDPKKRITSAQVLEHPWIREGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNIDTDNSGSITYEELRAGLQRLGSKLTEAEVRQLMDAADVDGNGSIDYIEFITATMHRHRLERDEHLYKAFQYFDKDNSGFITRDELESAMKEYGMGDEATIREIISEVDTDNDGRINYEEFVAMMRSGTTHQGGKLF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271870g00027 398 ProSiteProfiles EF-hand calcium-binding domain profile. 358 392 IPR002048 GO:0005509
Stsc271870g00027 398 CDD STKc_CAMK 1 206 - -
Stsc271870g00027 398 Gene3D - 215 392 - -
Stsc271870g00027 398 ProSitePatterns EF-hand calcium-binding domain. 263 275 IPR018247 -
Stsc271870g00027 398 Pfam EF-hand domain pair 255 315 IPR002048 GO:0005509
Stsc271870g00027 398 Pfam EF-hand domain pair 325 387 IPR002048 GO:0005509
Stsc271870g00027 398 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 382 - -
Stsc271870g00027 398 Coils Coil 272 292 - -
Stsc271870g00027 398 ProSiteProfiles EF-hand calcium-binding domain profile. 250 285 IPR002048 GO:0005509
Stsc271870g00027 398 ProSiteProfiles EF-hand calcium-binding domain profile. 322 357 IPR002048 GO:0005509
Stsc271870g00027 398 FunFam calcium-dependent protein kinase 1 35 214 - -
Stsc271870g00027 398 SMART efh_1 290 318 IPR002048 GO:0005509
Stsc271870g00027 398 SMART efh_1 326 354 IPR002048 GO:0005509
Stsc271870g00027 398 SMART efh_1 254 282 IPR002048 GO:0005509
Stsc271870g00027 398 SMART efh_1 361 389 IPR002048 GO:0005509
Stsc271870g00027 398 SUPERFAMILY Protein kinase-like (PK-like) 3 228 IPR011009 -
Stsc271870g00027 398 SUPERFAMILY EF-hand 246 386 IPR011992 -
Stsc271870g00027 398 ProSitePatterns EF-hand calcium-binding domain. 299 311 IPR018247 -
Stsc271870g00027 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Stsc271870g00027 398 ProSiteProfiles EF-hand calcium-binding domain profile. 286 321 IPR002048 GO:0005509
Stsc271870g00027 398 ProSitePatterns EF-hand calcium-binding domain. 370 382 IPR018247 -
Stsc271870g00027 398 ProSiteProfiles Protein kinase domain profile. 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271870g00027 398 Pfam Protein kinase domain 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271870g00027 398 ProSitePatterns EF-hand calcium-binding domain. 335 347 IPR018247 -
Stsc271870g00027 398 SMART serkin_6 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271870g00027 398 FunFam Calcium-dependent protein kinase 1 215 390 - -
Stsc271870g00027 398 Gene3D Phosphorylase Kinase; domain 1 1 34 - -
Stsc271870g00027 398 CDD EFh 329 387 IPR002048 GO:0005509
Stsc271870g00027 398 Gene3D Transferase(Phosphotransferase) domain 1 35 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271870g00027 Stsc-Chr271870 140654 143691 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271870g00027 1 393 EF-hand Containing Proteins AT3G20410 86.260 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc271870g00027 Pkinase 2.4e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271870g00027 K13412 - gmx:100794852 730.709