Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271870g00026 ATGCAGCATTTGAGTGGACAACCAAACATTGTTGAATTCAAAGGTGCTTATGAGGACAAGCATTCAGTTCATGTTGTCATGGAATTGTGTGCAGGTGGTGAGCTTTTCGATAGGATCATTGCAAAGGGACATTACAGTGAAAGAGCTGCAGCTTCAATATGCAGACAGATTGTGAATGTTGTTCATATTTGCCATTTCATGGGTGTGATGCATAGAGATCTTAAGCCAGAGAATTTCTTGTTGTCCAGTAAGGATGACAAGGCACTTCTCAAGGCCACAGATTTCGGCCTCTCGGTATTCATTGATGAAGGAAAGGTGTATCGCGATATAGTTGGGAGCGCTTATTATGTAGCCCCGGAAGTTCTACGTCGTAGATACGGAAAGGAAATAGATGTATGGAGTGCAGGAGTTATATTATATATCTTACTCAGTGGTGTGCCTCCATTCTGGGCAGAGACCGAAAAGGGAATATTTGATGCCATATTGGAAGGCCATATTGATTTCGAAAGCGCCCCGTGGCCAAGTATATCGAATAGTGCTAAGGACCTCGTTCGTAAGATGCTTACACAGGACCCGAAGAAACGCATCACTTCTGCTCAGGTTCTTGAGCACCCATGGATTAGAGAAGGTGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTTAGAGCAATGAATAAACTAAAGAAACTTGCACTCAAGGTCATAGCTGAAAATCTTTCTGAAGAAGAGATCCAAGGTTTAAAGGCAATGTTTACAAATATCGACACTGACAACAGCGGTTCAATCACATATGAGGAACTAAGGGCCGGATTGCAACGACTTGGATCGAAACTCACTGAAGCCGAAGTTCGGCAGCTGATGGATGCTGCTGATGTAGATGGAAACGGAAGTATCGACTACATCGAATTCATCACTGCTACAATGCATAGACATAGGTTAGAAAGAGATGAGCATCTTTACAAGGCCTTCCAGTATTTTGATAAAGACAACAGCGGGTTTATCACAAGAGATGAACTAGAATCAGCCATGAAGGAATATGGTATGGGTGATGAAGCCACAATCAGGGAAATCATATCAGAAGTTGATACAGATAATGTAAGCCTATTTTCTTTAACCTTAACCCTAACCAAGCATTTTTCCCACTAG 1170 0.4222 MQHLSGQPNIVEFKGAYEDKHSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDDKALLKATDFGLSVFIDEGKVYRDIVGSAYYVAPEVLRRRYGKEIDVWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESAPWPSISNSAKDLVRKMLTQDPKKRITSAQVLEHPWIREGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNIDTDNSGSITYEELRAGLQRLGSKLTEAEVRQLMDAADVDGNGSIDYIEFITATMHRHRLERDEHLYKAFQYFDKDNSGFITRDELESAMKEYGMGDEATIREIISEVDTDNVSLFSLTLTLTKHFSH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271870g00026 389 CDD STKc_CAMK 1 206 - -
Stsc271870g00026 389 ProSitePatterns EF-hand calcium-binding domain. 263 275 IPR018247 -
Stsc271870g00026 389 Gene3D Phosphorylase Kinase; domain 1 1 34 - -
Stsc271870g00026 389 Coils Coil 272 292 - -
Stsc271870g00026 389 ProSiteProfiles EF-hand calcium-binding domain profile. 250 285 IPR002048 GO:0005509
Stsc271870g00026 389 FunFam calcium-dependent protein kinase 1 35 214 - -
Stsc271870g00026 389 ProSiteProfiles EF-hand calcium-binding domain profile. 322 357 IPR002048 GO:0005509
Stsc271870g00026 389 Gene3D - 215 380 - -
Stsc271870g00026 389 Pfam Protein kinase domain 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271870g00026 389 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 373 - -
Stsc271870g00026 389 ProSitePatterns EF-hand calcium-binding domain. 299 311 IPR018247 -
Stsc271870g00026 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Stsc271870g00026 389 FunFam Calcium-dependent protein kinase 1 215 379 - -
Stsc271870g00026 389 ProSiteProfiles EF-hand calcium-binding domain profile. 286 321 IPR002048 GO:0005509
Stsc271870g00026 389 CDD EFh 329 373 IPR002048 GO:0005509
Stsc271870g00026 389 Pfam EF-hand domain pair 255 315 IPR002048 GO:0005509
Stsc271870g00026 389 Pfam EF-hand domain pair 325 374 IPR002048 GO:0005509
Stsc271870g00026 389 SUPERFAMILY EF-hand 246 373 IPR011992 -
Stsc271870g00026 389 ProSiteProfiles Protein kinase domain profile. 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271870g00026 389 ProSitePatterns EF-hand calcium-binding domain. 335 347 IPR018247 -
Stsc271870g00026 389 SMART serkin_6 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271870g00026 389 CDD EFh 255 314 IPR002048 GO:0005509
Stsc271870g00026 389 SUPERFAMILY Protein kinase-like (PK-like) 1 221 IPR011009 -
Stsc271870g00026 389 Gene3D Transferase(Phosphotransferase) domain 1 35 214 - -
Stsc271870g00026 389 SMART efh_1 290 318 IPR002048 GO:0005509
Stsc271870g00026 389 SMART efh_1 326 354 IPR002048 GO:0005509
Stsc271870g00026 389 SMART efh_1 254 282 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271870g00026 Stsc-Chr271870 140553 143691 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271870g00026 1 373 EF-hand Containing Proteins AT3G20410 86.595 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc271870g00026 Pkinase 2.2e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271870g00026 K13412 - gmx:100794852 695.271