Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271870g00025 ATGGGTGCTTGTGTGAGTAGAAGAACAAGAAGTTCAAAAGCACAAGCACCCAAACCATCTGATGAAACTTCAGAATCAATTCTTGGGATCCCATTTGAGCACATTGGCAAGTACTACACTTTTGGTAAGGAATTAGGGAGAGGAAACTGTGGTGTGACACATTTGTGCACTGAGAGATCAAGTGGCTTGCAATATGCATGCAAATCAATCTCAAAGAAGAAGCTTCTATGCAGAAGCAATGATTATAAGGATGCCCTTAAGAAGGAGATCCAAGTTATGAAGCATTTGAGTGGCCAACCAAATGTTGCAGAGTTCAAAGCTGTTTTTGAGGATTCTCTTTATGTTCATATTGTTATGGAGTTGTGTTCAGGTGGCCATCTTCTCCAGAGGATTATGCAGAAGGGGCATTACAATGAAAGAGATGCTGCTTCTTTGTGTAAACAAATTGTTACTATTGTTCATCATTGTCATTTCATGGGTGTTATGCATAGGGATCTCAAACCAGAGAATTTATTGTTTTCTGCTAAGGGTGATGATGCAATTCTTAAGGCCATTGATTTTGGTCACTCCTCTTTCATTGAACAAGGGGAGAAATATGCTGATGTTCTTGGAAGTCCATACTATATTGCTCCAGAAGTTCTAAAAGGCAAACATGGAAAAGAAGCAGACATATGGAGTGCAGGAGTTATATTGTATGCCTTACTCAGTGGCATGCCTCCATTTTGGGCAGATAAAGAAGAGGGAATATTTAGAGCTATACTACTCGGTCGTATCGATTTTACTAGTCGTCCATGGCCGAAAATATCGAAGAATGCTAAGGACCTTGTGTCTAAGATGCTCACACTCGATCCAGCGAAACGGATTACATCTGCTGAAGTGCTAGAGCACAATTGGATTAAAGAAAATGTGAAAGCTTCTTCTCATCACAAGCAAATGGACAATGCAATCCTTTCTAGAATGAATGAATTCAGAGAAATGAATATGCTAAAGAGACTTTCCCTCAAAGTTATTGCACAAAATCTTCCTAAAGAAGAGATCCAAGGTTTGAAGACAATGTTTGCAAATATGGACAGTGATAATGATGGTACAATCACCACTGAAGAATTGAAGGCAGGAATGCAACAACTTGGGTCAATTGTTACTGATTCTGAAGCTCAACAGCTTATGGATGCTGTTGATATGGATAGAAATGGAACTTTTGACTGCATGGAGTTCATCACTGCTGCAATGCATAGGCATAGGTTAAGAAGAGATAAAAATCTATACAAGGCCTTCCAATATTTTAATATAGACAAGACTGGGTTTATTACAAGAGATAATCTGAAAACATTGATGAAAGAGTTTGGTGCCAATGATGAAGTCACAATCAATGAAATAATGTCTAAAGTTGATACAGATAATGATGGTAGAATAAGCTATGAAGAATTTTGTACAATGATGATCAATTAG 1449 0.3803 MGACVSRRTRSSKAQAPKPSDETSESILGIPFEHIGKYYTFGKELGRGNCGVTHLCTERSSGLQYACKSISKKKLLCRSNDYKDALKKEIQVMKHLSGQPNVAEFKAVFEDSLYVHIVMELCSGGHLLQRIMQKGHYNERDAASLCKQIVTIVHHCHFMGVMHRDLKPENLLFSAKGDDAILKAIDFGHSSFIEQGEKYADVLGSPYYIAPEVLKGKHGKEADIWSAGVILYALLSGMPPFWADKEEGIFRAILLGRIDFTSRPWPKISKNAKDLVSKMLTLDPAKRITSAEVLEHNWIKENVKASSHHKQMDNAILSRMNEFREMNMLKRLSLKVIAQNLPKEEIQGLKTMFANMDSDNDGTITTEELKAGMQQLGSIVTDSEAQQLMDAVDMDRNGTFDCMEFITAAMHRHRLRRDKNLYKAFQYFNIDKTGFITRDNLKTLMKEFGANDEVTINEIMSKVDTDNDGRISYEEFCTMMIN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271870g00025 482 FunFam Calcium-dependent protein kinase 5 127 307 - -
Stsc271870g00025 482 SMART serkin_6 39 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271870g00025 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Stsc271870g00025 482 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 476 - -
Stsc271870g00025 482 Pfam Protein kinase domain 39 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271870g00025 482 Gene3D - 317 410 - -
Stsc271870g00025 482 MobiDBLite consensus disorder prediction 8 22 - -
Stsc271870g00025 482 ProSitePatterns EF-hand calcium-binding domain. 357 369 IPR018247 -
Stsc271870g00025 482 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Stsc271870g00025 482 ProSiteProfiles EF-hand calcium-binding domain profile. 344 379 IPR002048 GO:0005509
Stsc271870g00025 482 Gene3D Transferase(Phosphotransferase) domain 1 123 311 - -
Stsc271870g00025 482 ProSiteProfiles Protein kinase domain profile. 39 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271870g00025 482 Pfam EF-hand domain pair 419 480 IPR002048 GO:0005509
Stsc271870g00025 482 CDD EFh 349 410 IPR002048 GO:0005509
Stsc271870g00025 482 SUPERFAMILY Protein kinase-like (PK-like) 30 317 IPR011009 -
Stsc271870g00025 482 CDD STKc_CAMK 39 298 - -
Stsc271870g00025 482 SUPERFAMILY EF-hand 340 480 IPR011992 -
Stsc271870g00025 482 ProSiteProfiles EF-hand calcium-binding domain profile. 456 482 IPR002048 GO:0005509
Stsc271870g00025 482 Gene3D - 327 480 - -
Stsc271870g00025 482 Gene3D Phosphorylase Kinase; domain 1 30 122 - -
Stsc271870g00025 482 ProSiteProfiles EF-hand calcium-binding domain profile. 380 415 IPR002048 GO:0005509
Stsc271870g00025 482 SMART efh_1 348 376 IPR002048 GO:0005509
Stsc271870g00025 482 SMART efh_1 420 448 IPR002048 GO:0005509
Stsc271870g00025 482 SMART efh_1 455 482 IPR002048 GO:0005509
Stsc271870g00025 482 SMART efh_1 384 412 IPR002048 GO:0005509
Stsc271870g00025 482 Pfam EF-hand domain pair 361 409 IPR002048 GO:0005509
Stsc271870g00025 482 CDD EFh 423 480 IPR002048 GO:0005509
Stsc271870g00025 482 FunFam Calmodulin-3 338 482 - -
Stsc271870g00025 482 MobiDBLite consensus disorder prediction 1 25 - -
Stsc271870g00025 482 ProSiteProfiles EF-hand calcium-binding domain profile. 416 451 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271870g00025 Stsc-Chr271870 136037 138564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271870g00025 16 480 EF-hand Containing Proteins AT3G20410 60.860 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc271870g00025 Pkinase 8.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271870g00025 K13412 - qsa:O6P43_021169 620.542