Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271870g00023 ATGCCCTCAGCTCAAGATCCGTTTTACGTTGTTAAAGAGGAGATTCAGGATTCCATTGATAAGTTGCAATCTTCTTTTCACCAATGGGAAAGCAATTCTGATGGTGGAGAGCGAGCAAATCTATCAAAGGAAGTTGTTGCTGCTTGTGAAAGCATTGAATGGCAGGTGGATGAATTGGACAAAGCGATTGCTGTTGCAGCTAGAGATCCTTCTTGGTATGGCATTGATGATGTTGAGATTGAAAACCGGAGAAGGTGGACCAGCGGTGCTCGGACTCAGGTGCACTCAATGAAGAATACAGTGGAAGCCGGAAAGGCCTTGAATCTGACGAACCATGCAAGTGTGAATGGGATGCGCAGGGAATTAATGAGGCTTCCTAATTCACATCAAGCTGATACATCCAACCAGTATTCTGCCAACGATAACGATGATTTCATTGAATCAGAATCTGACAGACAGATGCTGCTTATGAAGCAACAGGATGAGGAGTTGGATGAGCTTAGTATCAGTGTACAAAAAATTGGAGGTATTGGACTTACGATACATGAAGAACTCCTTGCACAGGAAAAGATTATAGATGATCTCGGGAATGAGATGGACAGTACATCAAATCGTCTAGATTTTGTACAAAAAAAAGTGGCAATGGTGATGAAGAAGGCTAGTGCAAAGGGTCAGATCATGATGATATTGGGTTTGCTGGCACTGTTTATTTTCCTCTTCATCTTGGTGTTCTTCACCTAA 741 0.4251 MPSAQDPFYVVKEEIQDSIDKLQSSFHQWESNSDGGERANLSKEVVAACESIEWQVDELDKAIAVAARDPSWYGIDDVEIENRRRWTSGARTQVHSMKNTVEAGKALNLTNHASVNGMRRELMRLPNSHQADTSNQYSANDNDDFIESESDRQMLLMKQQDEELDELSISVQKIGGIGLTIHEELLAQEKIIDDLGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271870g00023 246 CDD SNARE_Qc 157 214 - -
Stsc271870g00023 246 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Stsc271870g00023 246 PANTHER GOLGI SNARE BET1-RELATED 129 243 - -
Stsc271870g00023 246 SMART tSNARE_6 149 216 IPR000727 -
Stsc271870g00023 246 FunFam syntaxin-61 isoform X1 157 218 - -
Stsc271870g00023 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Stsc271870g00023 246 Coils Coil 12 32 - -
Stsc271870g00023 246 Gene3D - 161 225 - -
Stsc271870g00023 246 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Stsc271870g00023 246 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Stsc271870g00023 246 Coils Coil 192 212 - -
Stsc271870g00023 246 Gene3D - 2 104 - -
Stsc271870g00023 246 SUPERFAMILY SNARE fusion complex 152 216 - -
Stsc271870g00023 246 Pfam SNARE domain 191 242 IPR000727 -
Stsc271870g00023 246 FunFam Syntaxin 10 3 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271870g00023 Stsc-Chr271870 124112 127108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271870g00023 55 246 SNARE and Associated Proteins AT1G28490 68.750 2.56e-93 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271870g00023 K08500 - gmx:100793612 363.999