Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271870g00014 ATGAATTCAGGAAGATGTGCTGCTTGCAAGAGTCAAAGAAGAAAATGCCCTTCTGATTGCATTTTCTCTCCATATTTTCCTGCCAATGATCCTCAAAGATTTGCTTGTGTACACAAAATCTATGGAAGCAGCAATGTTGGAAAAATGCTTCAGGAAATCCCACCCAATCTAAGAGAAGAAGCAGCAAATACATTGTATTTAGAAGCAAAATGGAGGATTGAAGATCCTATTTATGGGTGTGTTGGCATTATCTCATCATTGTATAAACAAATTCAAAATGCAGAAATTGAGTTAGCAAAAATCCAAACTCAGATTGCTTTCTACAAGCTTCAAACCCAACAACAGGTTATTGAAGCTGAACCAAACATGGAGGTTTTGCAATCACAAAGCAGTAATATGGAGCAGTTTGAAGTGGACAATCTATTTGAGTGGGAAAATCCAACTATTGCTTCTTGGTTCAATTGA 465 0.3677 MNSGRCAACKSQRRKCPSDCIFSPYFPANDPQRFACVHKIYGSSNVGKMLQEIPPNLREEAANTLYLEAKWRIEDPIYGCVGIISSLYKQIQNAEIELAKIQTQIAFYKLQTQQQVIEAEPNMEVLQSQSSNMEQFEVDNLFEWENPTIASWFN 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271870g00014 154 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Stsc271870g00014 154 Coils Coil 84 111 - -
Stsc271870g00014 154 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Stsc271870g00014 154 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271870g00014 Stsc-Chr271870 86285 87031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271870g00014 1 117 AS2 family AT3G26620 58.974 2.45e-49 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc271870g00014 LOB 1.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271870g00014 - - ccaj:109810657 197.593