Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271870g00001 ATGAAGGCGGTTGAGATTTCCCAAGTCGCTGCTGAGCAGCTTGTTCTTGAACTCAGCAACCCCGATCTCCGAGAAAATGCTCTTCTCGAACTTTCCAAGAAGAGAGAGATGTATCAAGATCTCGCTCTGTTATTGTGGAATTCCTTTGGAACTGTTGCAGCACTGTTACAGGAAATAGTTTCTATTTATCCTGTTCTTTCGCCACCGAATCTCACTCCAGCACAATCCAATCGTGTGTGCAATGCTCTTGCTCTTCTTCAGTGTGTGGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGCTCATATACCTCTATATCTGTATCCGTTCCTGAATACAACAAGCAAGTCAAGACCATTTGAATATTTGAGGCTTACCAGCCTTGGTGTGATTGGTGCCTTAGTGAAGGTTGATGATACAGAGGTCATAAGCTTCCTGCTTTCAACTGAAATAATTCCGTTGTGCCTCCGCACTATGGAACTCGGAAGTGAATTGTCCAAAACAGTTGCTACTTTCATTGTTCAGAAAATTCTGTTGGATGATGTGGGTTTGGACTATGTTTGTACTACAGCAGAACGCTTTTTTGCGGTAGGCCGAGTTCTGGCGAACATGGTAGCAGCTCTTGCTGAGCAACCTTCATCTCGCCTTCTGAAGCACATCATTCGCTGCTATCTTCGTCTATCTGACAATAGGAGGGCTTGTGATGCACTAAGAAGCTGTCTTCCGGAGATGTTAAGAGATGCTACTTTTAATAACTGTCTCCGGGATGACCAAACAACTAAGAGGTGGCTGCAACAGCTGCTTGTCAATGTTGGAGTGAGTAGGGTTTCTTCAATGCAAGCCGGAGGTGGATTTGATCACAACATGATGATGTCCTGA 882 0.4467 MKAVEISQVAAEQLVLELSNPDLRENALLELSKKREMYQDLALLLWNSFGTVAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMELGSELSKTVATFIVQKILLDDVGLDYVCTTAERFFAVGRVLANMVAALAEQPSSRLLKHIIRCYLRLSDNRRACDALRSCLPEMLRDATFNNCLRDDQTTKRWLQQLLVNVGVSRVSSMQAGGGFDHNMMMS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271870g00001 293 Gene3D - 4 273 IPR011989 -
Stsc271870g00001 293 Pfam Cell differentiation family, Rcd1-like 14 272 - -
Stsc271870g00001 293 SUPERFAMILY ARM repeat 16 240 IPR016024 -
Stsc271870g00001 293 FunFam Cell differentiation protein RCD1 7 275 - -
Stsc271870g00001 293 PANTHER UNCHARACTERIZED 8 275 IPR007216 GO:0006402|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271870g00001 Stsc-Chr271870 12141 15720 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Stsc271870g00001 Rcd1 5.8e-129 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271870g00001 K12606 - gmx:100784529 515.768