Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271869g00066 ATGGCGAAGATGCCGCACAAGAAAACCCTCACAGTCAAGAACAATAGTAGTAGTAATAGTAGTACTTCTTCTTCTTCTTCTACCACCACCATTACTACAGCCACACCATCCAAGAAAGTTGTGAAGAAAAGAACTCGCAAAACCATTCCAAGAGATTCACCTCCTCAACGAAGCTCTGTCTACCGTGGTGTCACTAGGCATCGGTGGACGGGTCGATATGAGGCTCATTTGTGGGACAAGAATTGTTGGAATGAATCACAGACCAAGAAAGGAAGACAAGGAGCATATGATGATGAGGAAGCGGCTGCACGTGCTTATGACTTGGCTGCATTGAAGTATTGGGGCCAACACACCATCCTCAATTTTCCAGCATCAAATTATGAAGAGGAGCTCAAGGACATGGAGGGACAGTCCAAAGAAGAATACATTGGATCCTTAAGAAGAAAAAGCAGTGGATTCTCACGAGGAGTCTCAAAATACAGAGGAGTAGCGAGACACCACCACAATGGAAGATGGGAAGCTCGAATTGGGAGGGTCTTCGGCAACAAGTATCTATATCTTGGAACTTATGCTACACAAGAGGAAGCTGCTATGGCCTATGACATGGCTGCCATAGAGTATCGTGGACTTAATGCTGTTACAAACTTTGATCTTAGCCACTACATCCATTGGCTACGTCCTAAGCTCCAAGAAAACCAAAAAAACCCTACCCATACTCAAGAACCTTCTTCAAGTAGTTCCGAGCTCGATAATCAATTAGGATTTAGCGATGATCAAGTTGGTTTAATCGCCGGGGAAATTGGGTCTGAAGAATCGACCCAATTTAAAATTGGTGGCGAAACCGTGCCGGCTTCGGCGCTTGGAATTCTTTTAAAATCACCCAAATTCAAAGAAATGTTAGAAAGAACTTCAATTGATGAAGATAATCTTCACTCTCAAACTTCTCCGGAATCAAACCCTAATCATCGGCGTACGTTTCCCGAAGACATTCAAACTTTCTTTGAGAGCCATGATTCCAATATCTACACTGAAAATGATGACATCATATTTAGTGAATTGGGCTCATTTTCATCAACACCATTTTTTCAGTATGAGCTTGATGCTTAA 1107 0.4264 MAKMPHKKTLTVKNNSSSNSSTSSSSSTTTITTATPSKKVVKKRTRKTIPRDSPPQRSSVYRGVTRHRWTGRYEAHLWDKNCWNESQTKKGRQGAYDDEEAAARAYDLAALKYWGQHTILNFPASNYEEELKDMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAMAYDMAAIEYRGLNAVTNFDLSHYIHWLRPKLQENQKNPTHTQEPSSSSSELDNQLGFSDDQVGLIAGEIGSEESTQFKIGGETVPASALGILLKSPKFKEMLERTSIDEDNLHSQTSPESNPNHRRTFPEDIQTFFESHDSNIYTENDDIIFSELGSFSSTPFFQYELDA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271869g00066 368 FunFam AP2-like ethylene-responsive transcription factor 158 219 - -
Stsc271869g00066 368 ProSiteProfiles AP2/ERF domain profile. 159 217 IPR001471 GO:0003700|GO:0006355
Stsc271869g00066 368 MobiDBLite consensus disorder prediction 1 61 - -
Stsc271869g00066 368 FunFam AP2-like ethylene-responsive transcription factor 59 125 - -
Stsc271869g00066 368 Pfam AP2 domain 59 115 IPR001471 GO:0003700|GO:0006355
Stsc271869g00066 368 Pfam AP2 domain 158 209 IPR001471 GO:0003700|GO:0006355
Stsc271869g00066 368 SUPERFAMILY DNA-binding domain 158 219 IPR016177 GO:0003677
Stsc271869g00066 368 MobiDBLite consensus disorder prediction 304 325 - -
Stsc271869g00066 368 Gene3D AP2/ERF domain 158 219 IPR036955 GO:0003700|GO:0006355
Stsc271869g00066 368 Gene3D AP2/ERF domain 60 126 IPR036955 GO:0003700|GO:0006355
Stsc271869g00066 368 SUPERFAMILY DNA-binding domain 59 125 IPR016177 GO:0003677
Stsc271869g00066 368 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 272 - -
Stsc271869g00066 368 CDD AP2 158 219 IPR001471 GO:0003700|GO:0006355
Stsc271869g00066 368 ProSiteProfiles AP2/ERF domain profile. 60 123 IPR001471 GO:0003700|GO:0006355
Stsc271869g00066 368 SMART rav1_2 159 223 IPR001471 GO:0003700|GO:0006355
Stsc271869g00066 368 SMART rav1_2 60 129 IPR001471 GO:0003700|GO:0006355
Stsc271869g00066 368 MobiDBLite consensus disorder prediction 232 251 - -
Stsc271869g00066 368 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Stsc271869g00066 368 PRINTS Ethylene responsive element binding protein signature 199 219 IPR001471 GO:0003700|GO:0006355
Stsc271869g00066 368 MobiDBLite consensus disorder prediction 9 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271869g00066 Stsc-Chr271869 302674 307656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271869g00066 38 221 AP2-EREBP Transcription Factor Family AT1G72570 65.263 1.38e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc271869g00066 AP2 1.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271869g00066 K09285 - rcu:8280276 431.795