Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271869g00057 ATGAAGGAGAGGCTTTGTGAGCTCTGCAACCAAAAAGCTTCGCTCTTCTGCGCCTCTGACTCCGCCTTCCTCTGCTCCAAATGCGACGCCACCGTTCATAATGCAAACTTTCTCGTCGCTCGCCACCTCCGCCGCCTCCTCTGCTTCAACTGCAATTCTTTCTCCGGAATCTACATCTCCGGCGCCTCCTCTCCTCGCACCGCCGACTCACATACCACCTGCCGCTCCTGCTCCCCGCCGGACGAGGCCAATTCCCTCTCTTCTCCTCCACCTTCTTCCTCCACCTCCTCTGCATGCGTTTCCAGCTCGGAGCCACGCTCCAGAAACAACAACAACAACAAGATCAGAACAAAACACTCGCCGGAAAAGAGAATCAGAACGGTAACGTCCTCCGGTTCGGCGGTGACGACGGACGACGAGGATTTTTCAACGCCGAAGCAAAAGCGGGCGAGGAATAATAATAATGGCGGCGGATCTGGTTCAGATGAGGTAGGAAGGGCGGTGAGGAAAGCGTATTCAGTGTTCGCGAAATGGAGTGAGGAATTAGGGTTGGGATTAAACGACGGGGAACGCGTGTCGTCTCTGGCTTGTAGATCGTTGAGGGTGTGGTTTGGAAAATGGAAGGAAGGAGTCGGTATTCCGTATAAGGTGGGATGTGCGACGTCGTTTTGGTTGGGTGTGAGATTTTGTGGCATCGCCACGTTTGAGAATCTGCGGAAAATGGAAGTGATGTCAGGTGTGCCAGCTAAGCTCATTCTCCAAGCATATGCCTTCCTCGCACGTGTCTTCTTCTTCTCCCAACAACACAACAACTTCTTCCATTTGCAAGAAGGCTCTGATGAATCTTAG 849 0.5289 MKERLCELCNQKASLFCASDSAFLCSKCDATVHNANFLVARHLRRLLCFNCNSFSGIYISGASSPRTADSHTTCRSCSPPDEANSLSSPPPSSSTSSACVSSSEPRSRNNNNNKIRTKHSPEKRIRTVTSSGSAVTTDDEDFSTPKQKRARNNNNGGGSGSDEVGRAVRKAYSVFAKWSEELGLGLNDGERVSSLACRSLRVWFGKWKEGVGIPYKVGCATSFWLGVRFCGIATFENLRKMEVMSGVPAKLILQAYAFLARVFFFSQQHNNFFHLQEGSDES 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271869g00057 282 MobiDBLite consensus disorder prediction 126 140 - -
Stsc271869g00057 282 CDD Bbox1_BBX-like 5 47 - -
Stsc271869g00057 282 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Stsc271869g00057 282 MobiDBLite consensus disorder prediction 62 110 - -
Stsc271869g00057 282 MobiDBLite consensus disorder prediction 62 163 - -
Stsc271869g00057 282 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 77 - -
Stsc271869g00057 282 SMART bboxneu5 1 47 IPR000315 GO:0008270
Stsc271869g00057 282 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271869g00057 Stsc-Chr271869 272946 274209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271869g00057 5 268 C2C2-CO-like Transcription Factor Family AT3G21150 31.818 1.71e-21 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc271869g00057 zf-B_box 4.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271869g00057 - - adu:107463828 375.941