Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271869g00050 ATGGATGGTATTCATGGGGGTGATTCTCGGATACACATGAGTGAGGGACAGCATCCTATGCATGTGTCATTCGTGCAAGAACACGAGCATCATGGATTGCATCATATGAGTAATGGGAATGGGATGGAAGACGATCAGAGTAACGGTGATGATACTAACTGCGGAGGAAGTGAGAGTGTTGAAGGTGAAATCCCTTCTAATCATGGAAATCTCCCTGAGAATCACACTGGAATGATTGATCAAGGGGGTGATGTTGGGGATCAACTTACATTGTCTTTCCAAGGCCAAGTTTATGTATTTGACTCGGTGTCACCAGAAAAGGTTCAAGCTGTACTGCTACTATTGGGAGGCCGTGAAGTACCACCGACTATGCCTGCCATGCCAATATTGTCCCACCAAAATAATCAGGGATTTACTGGTACGCCACAAAAGTTCAGCGTCCCTCAAAGATTAGCCTCATTGCTAAGATTTCGTGAAAAACGGAAAGAAAGAAATTTTGACAAAAAAATTCGCTATACTGTTCGTAAAGAAGTAGCGTTAAGGATGCAAAGAAATAAAGGTCAGTTTACATCTTCTAAGCCCAATCATGATGAATCTGGATCAGGTGCAGCAAACTGGGGGACAAATGAAAGCTGGTCATCAGATAATAATGGATCCCAACAACAGGATATCGTTTGTCGGCACTGCGGTATTAGTGAGAAGTGCACACCAATGATGCGGCGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAACTCTTAGGGACCTATCGAGAGCAGCATCCATGGCTGGACATAATTCTCAGTTAAACAAGAATGAGAATAAAAGTTTTGAGGCCAACCAGATGGTACAGACAGTGGCAGCTGATGTTGATAATTCTTCATGA 915 0.4383 MDGIHGGDSRIHMSEGQHPMHVSFVQEHEHHGLHHMSNGNGMEDDQSNGDDTNCGGSESVEGEIPSNHGNLPENHTGMIDQGGDVGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPPTMPAMPILSHQNNQGFTGTPQKFSVPQRLASLLRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPNHDESGSGAANWGTNESWSSDNNGSQQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAASMAGHNSQLNKNENKSFEANQMVQTVAADVDNSS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271869g00050 304 Coils Coil 300 304 - -
Stsc271869g00050 304 Pfam tify domain 88 116 IPR010399 -
Stsc271869g00050 304 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Stsc271869g00050 304 MobiDBLite consensus disorder prediction 184 219 - -
Stsc271869g00050 304 Gene3D - 216 284 IPR013088 GO:0006355|GO:0008270
Stsc271869g00050 304 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Stsc271869g00050 304 MobiDBLite consensus disorder prediction 40 68 - -
Stsc271869g00050 304 CDD ZnF_GATA 225 267 IPR000679 GO:0006355|GO:0043565
Stsc271869g00050 304 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Stsc271869g00050 304 PANTHER GATA TRANSCRIPTION FACTOR 28 26 291 IPR045280 GO:0006355
Stsc271869g00050 304 SMART tify_2 82 117 IPR010399 -
Stsc271869g00050 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 284 - -
Stsc271869g00050 304 ProSiteProfiles GATA-type zinc finger domain profile. 220 278 IPR000679 GO:0006355|GO:0043565
Stsc271869g00050 304 MobiDBLite consensus disorder prediction 30 68 - -
Stsc271869g00050 304 Pfam CCT motif 150 192 IPR010402 GO:0005515
Stsc271869g00050 304 MobiDBLite consensus disorder prediction 183 219 - -
Stsc271869g00050 304 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Stsc271869g00050 304 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271869g00050 Stsc-Chr271869 238376 242063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271869g00050 1 303 Tify Gene Family AT1G51600 63.192 1.96e-138 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc271869g00050 CCT 3.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271869g00050 - - pvu:PHAVU_008G254600g 526.554