Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271869g00047 ATGACCAACAGCCACATAACCATAACCGTCGACGACAGCACGCATTCTGACGCCACCGAACACCGCCGCACTCCTCCTCCTCCTTCCGCTTCCGTCAATCTTGATTATGCCGACGACGACGATGAAGACGACGACGTTGCAGATCCAAATGATCCTTTCGATATTCAACACACCAAGCATGCGCCCATCGAGACCCTCCGCCGTTGGAGACAAGCAGCACTCGTGCTCAATGCTTCAAGGCGCTTTAGATATACCTTGGACCTGAAAAAGGAAGAGGAGAGACAGCAAAAGAAAAGCCTGATTAGAGCCCATGCACAAGTCATAAGAGCAGCATTGCTCTTCAGATTGGCCGGTGAACGTGAACTAGTGGTAACAGCACCGACACCTGCACACCCAGTTGGTGACTTTGGAATTGGGCTCGAGCAACTTACTTCAGTTTCTAAGGAGCAGAACACTTCTGCTTTAGAAGAATATGGAGGGGTCAAGGGCTTATCAAATTTAATAAGGTCAAATCTCGATAAAGGAATTAGTGGAGATGATGCTGATTTACTAAGAAGGAAAAATGCATATGGAACCAACACATATCCCCGGAAAAAAGGAAGAAGCTTCTGGATGTTTTTATGGGAAGCATGGCAAGATCTAACTCTTATAATATTGATTATAGCAGCAGCTGTGTCATTGGTACTTGGAATAAAAACAGAGGGTTTGAGTGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTCTTCTGGTCATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCTCTGCAGTTTAAGAATTTGAATGCAGAGAAACAAAATATACAATTGGAGGTCATCAGAGGTGGCAGAACAGTTAAATTGTCGATATTTGATATTGTTGTTGGTGATGTAGTACCTCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTATTAATCACGGGTCATTCACTTGCCGTTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCACAAGGATCACAAAACACCCTTTTTGATGTCTGGCTGCAAAGTAGCTGATGGAGTTGGAGTTATGCTGGTAACTGGTGTTGGTATAAATACGGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATAATGGAGAAGAGACTCCATTGCAGGTACGTTTGAATGGAGTAGCAACTTTTATTGGAGTAGTTGGGCTTTCTGTTGCTGTTTTAGTGCTAGCAGTCCTCTTGGGCAGATACTTTTCTGGCCATTCTACTGATGATGAAGGAAAAGTGGAATTTATAGCCGGAAAGACTAAAGCAAGTACTGCAGTTGATAGCGTAATCAAGATTTTCACCATTGCAGTTACCATTGTGGTTGTTGCAGTACCTGAAGGTCTACCTTTGGCTGTTACCTTAACCCTGGCTTACTCAATGCGGAAAATGATGAAGGACAAAGCCCTGGTTCGGAGGCTGTCGGCATGCGAAACTATGGGCTCTGCGACAACAATATGCAGTGATAAGACAGGAACATTGACCTTAAATCAGATGACTGTAGTTGAGGCATACGTTGGAAGGAACAAATTAAATCCACCAAATGACTCATCAAAGTTAAATCCAGAAGTTTTATCCCTGATAAACGAGGGCATTGCACTGAATACTACCGGAAACGTTTTTGTGCCTAAGTTGGGTATGAATTTTGGTCTTCTCAGATCAAACACGACAGTTCTCAATGTATTCCCCTTTAATTCTGAGAAAAAAAGAGGTGGCGTTGCTGTGAAACTGGAGGGCTCTGGAGTACATATACATTGGAAAGGAGCTGCAGAAATACTTCTTGGAGCATGTACGCAATATTTTGATTCAGATGGTCATTTGCAATCCATTGAGGGAGAGAAGGTAGCTTTCAAGGAGGCTATTGATAACATGGCTGCTTGCAGCTTGCGTTGTGTTGCTATTGCTTACCGATCATATGAATTAGACAAAGTTCCATCTAATGAGGATGATTTGGCCCAATGGTCCTTACCAGAAAATGATCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGTGTCAAAGAAGCAGTGAAACTATGCACTGAAGCTGGTGTCAAGGTACGCATGGTCACGGGAGACAACCTTCAGACAGCAAGGGCAATAGCTTTGGAGTGTGGGATACTGACTTCAAATGAAGATGCTGTTGAACCAGTTGTAATTGAAGGAAAGAAATTCCGTGCACTAAGTGAAAAAGAAAGGGAACAGATTGCTAAGAAAATAACGGTGATGGGGAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCTCTACGTAAAGGAGGTGAAGTTGTTGCCGTCACAGGAGATGGAACCAATGATGCCCCGGCACTTCATGAGGCAGATATTGGTCTTTCCATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTGGATGATAACTTTGCATCAGTAGTAAAGGTCGTCCGTTGGGGACGTTCTGTTTATGCAAATATTCAGAAATTCATCCAGTTCCAGCTTACTGTTAATGTTGCTGCGCTTGTAATTAATGTTGTTGCAGCAATATCCTCTGGTGATGTTCCTTTGAATGCAGTACAGCTTCTATGGGTCAACCTTATCATGGACACACTTGGGGCGCTTGCACTGGCCACTGAACCACCAACGGACAGCCTTATGCGCAGGGCACCTGTTGGCCGAAGGGAGCCTCTTATAACGAATGTCATGTGGAGAAACTTGGTTGTACAGGCTATCTATCAAGTTACTGTTCTTCTCGTTCTGAACTTCGCTGGTGACAGTTTCTTACCTAAGCAAGAAACGAAATCCCTTGAGAATCAAACCAAGAATACTTTAATATTCAATGCATTCGTCCTGTGTCAAGGTGTGACTAACAACCGTCTTTTCATGGGAATTGTTGGAGTGACCTTTATCCTTCAGATAATTATCATCGAGTTTCTTGGAAAGTTCACCAAAACAGTGAAACTTGATTGGAAGCTGTGGATAGCTTCTATTGTTATTGCCGTTATGAGCTGGCCTCTTGCTGTTGCCGGAAAACTGATTCCAGTTCCGAAAACACCATTGACACGTTGCTTAGCGAAGCCACTTAGAAGATGGAGAAGGTCTCGAGCACAAAGTCAACTGAACACCCCCAGCACTAATTTTTCACGTTAA 3201 0.4346 MTNSHITITVDDSTHSDATEHRRTPPPPSASVNLDYADDDDEDDDVADPNDPFDIQHTKHAPIETLRRWRQAALVLNASRRFRYTLDLKKEEERQQKKSLIRAHAQVIRAALLFRLAGERELVVTAPTPAHPVGDFGIGLEQLTSVSKEQNTSALEEYGGVKGLSNLIRSNLDKGISGDDADLLRRKNAYGTNTYPRKKGRSFWMFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLSEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFKNLNAEKQNIQLEVIRGGRTVKLSIFDIVVGDVVPLKIGDQVPADGVLITGHSLAVDESSMTGESKIVHKDHKTPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDNGEETPLQVRLNGVATFIGVVGLSVAVLVLAVLLGRYFSGHSTDDEGKVEFIAGKTKASTAVDSVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMKDKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRNKLNPPNDSSKLNPEVLSLINEGIALNTTGNVFVPKLGMNFGLLRSNTTVLNVFPFNSEKKRGGVAVKLEGSGVHIHWKGAAEILLGACTQYFDSDGHLQSIEGEKVAFKEAIDNMAACSLRCVAIAYRSYELDKVPSNEDDLAQWSLPENDLVLLAIVGIKDPCRPGVKEAVKLCTEAGVKVRMVTGDNLQTARAIALECGILTSNEDAVEPVVIEGKKFRALSEKEREQIAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMRRAPVGRREPLITNVMWRNLVVQAIYQVTVLLVLNFAGDSFLPKQETKSLENQTKNTLIFNAFVLCQGVTNNRLFMGIVGVTFILQIIIIEFLGKFTKTVKLDWKLWIASIVIAVMSWPLAVAGKLIPVPKTPLTRCLAKPLRRWRRSRAQSQLNTPSTNFSR 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271869g00047 1066 FunFam Calcium-transporting ATPase 9 plasma membrane-type 355 525 - -
Stsc271869g00047 1066 Pfam E1-E2 ATPase 278 480 - -
Stsc271869g00047 1066 MobiDBLite consensus disorder prediction 1 59 - -
Stsc271869g00047 1066 SUPERFAMILY Calcium ATPase, transduction domain A 279 374 IPR008250 -
Stsc271869g00047 1066 FunFam Calcium-transporting ATPase 803 1034 - -
Stsc271869g00047 1066 Pfam Cation transporting ATPase, C-terminus 871 1029 IPR006068 -
Stsc271869g00047 1066 Gene3D - 209 497 - -
Stsc271869g00047 1066 NCBIfam HAD-IC family P-type ATPase 752 866 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271869g00047 1066 NCBIfam HAD-IC family P-type ATPase 440 524 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271869g00047 1066 SFLD C1.7: P-type atpase like 483 838 - -
Stsc271869g00047 1066 FunFam Calcium-transporting ATPase 257 377 - -
Stsc271869g00047 1066 MobiDBLite consensus disorder prediction 35 49 - -
Stsc271869g00047 1066 Pfam Cation transporter/ATPase, N-terminus 158 226 IPR004014 -
Stsc271869g00047 1066 CDD P-type_ATPase_Ca_PMCA-like 183 919 - -
Stsc271869g00047 1066 Gene3D - 62 115 - -
Stsc271869g00047 1066 SMART Cation_ATPase_N_a_2 160 231 IPR004014 -
Stsc271869g00047 1066 NCBIfam calcium-translocating P-type ATPase, PMCA-type 145 1032 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc271869g00047 1066 PRINTS Sodium/potassium-transporting ATPase signature 244 264 - -
Stsc271869g00047 1066 PRINTS Sodium/potassium-transporting ATPase signature 494 515 - -
Stsc271869g00047 1066 FunFam Calcium-transporting ATPase 209 266 - -
Stsc271869g00047 1066 SUPERFAMILY Calcium ATPase, transmembrane domain M 158 1032 IPR023298 -
Stsc271869g00047 1066 FunFam Calcium-transporting ATPase 61 117 - -
Stsc271869g00047 1066 SUPERFAMILY HAD-like 499 891 IPR036412 -
Stsc271869g00047 1066 Gene3D - 832 937 - -
Stsc271869g00047 1066 PRINTS P-type cation-transporting ATPase superfamily signature 501 515 - -
Stsc271869g00047 1066 PRINTS P-type cation-transporting ATPase superfamily signature 786 805 - -
Stsc271869g00047 1066 PRINTS P-type cation-transporting ATPase superfamily signature 810 822 - -
Stsc271869g00047 1066 PRINTS P-type cation-transporting ATPase superfamily signature 679 690 - -
Stsc271869g00047 1066 PRINTS P-type cation-transporting ATPase superfamily signature 701 711 - -
Stsc271869g00047 1066 PRINTS P-type cation-transporting ATPase superfamily signature 325 339 - -
Stsc271869g00047 1066 SFLD p-type atpase 483 838 IPR044492 -
Stsc271869g00047 1066 Pfam Ca2+-ATPase N terminal autoinhibitory domain 50 93 IPR024750 GO:0005516
Stsc271869g00047 1066 ProSitePatterns E1-E2 ATPases phosphorylation site. 503 509 IPR018303 -
Stsc271869g00047 1066 FunFam Calcium-transporting ATPase 679 831 - -
Stsc271869g00047 1066 Gene3D - 573 686 IPR023299 GO:0000166
Stsc271869g00047 1066 Gene3D - 511 524 IPR023299 GO:0000166
Stsc271869g00047 1066 Gene3D - 182 377 - -
Stsc271869g00047 1066 Gene3D - 687 831 IPR023214 -
Stsc271869g00047 1066 Gene3D - 498 510 IPR023214 -
Stsc271869g00047 1066 PANTHER CATION TRANSPORTING ATPASE 99 1032 - -
Stsc271869g00047 1066 Pfam haloacid dehalogenase-like hydrolase 498 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271869g00047 Stsc-Chr271869 213598 223186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271869g00047 38 1052 Primary Pumps ATPases AT3G21180 71.469 0.0 1506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271869g00047 K01537 - gmx:100777845 1643.25