Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271869g00020 ATGGCAGACCTGAAAGATCCGCTTCTCCCTCCGAAACTGGCCACGGCTGTCAACCTAAGAGAGGCTGCCAATCGGCCGATTGCTGCCGGAAGGCAGCTGTATCAAGGAGTGGATGTTCTCGAGTTAAAGAAGCGAGGGCAGAGTCTCCGGTCGTGGATTCGAGTTGACACGGCAGGAGACTCTCAGATAATTGAGGTAGACAAGTTTACTATGATGAGGCGTTGTGATCTTCCAGCGCGCGATCTTCGCCTCTTGGATCCGCTTTTTGTCTATCCATCAACAATCCTAGGAAGGGAAAAAGCTATTGTTGTCAACTTAGAACAGATAAGGTGTATTATTACTGCAGATGAGGTTCTTCTCCTTCATTCCCTGGACAGTTATGCTTGGAACTATGTCATGGAGCTACAACGACGATTAACATCCTCCAGTGTAGGCGAGCCAGGGGATGTGTGGCAGCCGGACAATTCTGATGTGAACCGGAGCAGAGGAAATAGGAATTTTGATAATGAATTTAGCAATAACACCTCCCCGGATTATTTGCCGTTCGAGTTCAGGGCACTGGAAGTTGCATTAGAGGCAGCATGCACATTTCTTGACTCTCAGGTGGCAGAGTTAGAAATTGAGGCTTATCCTTTGTTGGATGAACTAACATCTAAAATCAGTACTCTCGACTTGGAGCGTGCTCGTCGGCTGAAAAGCAGACTCGTTGCCCTGACTCGCAGGGTTCAGAAGGTTAGAGATGAAATAGAGCAGCTTATGGATGATGATGGAGATATGGCTGAGATGTATCTTACCGAGAAGAAAAGGCGAATGGAGTTGTCATTTTATGGAGATCAGTCTTTGTATAAATCAGTTGATGGCATATCCATATCTGCTCCGGTTTCTCCTGTTTCATCACCTCAGGATTTTCGGAAACTTGAAAAGAGCATTAGCAGTGCTAGGAGCCGGCACGAGAGCACGAGGAGTTCTGATAGCGCTAACGAAAACATAGAAGAGCTCGAGATGTTACTAGAAGCATACTTTGTAGTAATTGATAGCACTCTAAACAAGTTGACATCGTTGAAAGAGTACATCGACGACACAGAAGATTTCATCAACATTCAACTGGATAACGTGCGGAATCAGCTCATCCAATTCGAGTTGTTGCTCACGACAGCAACATTTGTAGTTGCCATCTTTGGTGTTGTAGCAGGAGTGTTTGGGATGAATTTCGAGATTTCATTATTTGGTGTTCCTTCAGCATTTGAGTGGGTTCTTATAATCACAGGAGTTTGTGGAGTCCTCATATTTAGTGCATTTGTGTGGTTCTTCAAGTACAGAAGACTCATGCCCCTCTAG 1338 0.4529 MADLKDPLLPPKLATAVNLREAANRPIAAGRQLYQGVDVLELKKRGQSLRSWIRVDTAGDSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLHSLDSYAWNYVMELQRRLTSSSVGEPGDVWQPDNSDVNRSRGNRNFDNEFSNNTSPDYLPFEFRALEVALEAACTFLDSQVAELEIEAYPLLDELTSKISTLDLERARRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKRRMELSFYGDQSLYKSVDGISISAPVSPVSSPQDFRKLEKSISSARSRHESTRSSDSANENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGVFGMNFEISLFGVPSAFEWVLIITGVCGVLIFSAFVWFFKYRRLMPL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271869g00020 445 Pfam CorA-like Mg2+ transporter protein 323 436 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Stsc271869g00020 445 Gene3D Magnesium transport protein CorA, transmembrane region 383 443 - -
Stsc271869g00020 445 Gene3D Magnesium transport protein CorA, transmembrane region 129 376 - -
Stsc271869g00020 445 FunFam Magnesium transporter MRS2-1 383 443 - -
Stsc271869g00020 445 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 30 443 IPR039204 -
Stsc271869g00020 445 Coils Coil 228 255 - -
Stsc271869g00020 445 Gene3D - 37 123 - -
Stsc271869g00020 445 CDD Mrs2_Mfm1p-like 52 442 IPR039204 -
Stsc271869g00020 445 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 382 435 IPR045863 -
Stsc271869g00020 445 MobiDBLite consensus disorder prediction 146 170 - -
Stsc271869g00020 445 FunFam Magnesium transporter MRS2-1 40 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271869g00020 Stsc-Chr271869 86113 88088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271869g00020 1 445 MRS2 Gene Family AT1G16010 81.250 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271869g00020 K16075 - gmx:100801387 698.353