Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271869g00009 ATGTCGGTTCATCTTGACGAAATGAGGATCCAAAGACGTGACTCCGAGCTATGGATGCATCATCGCTTGCTTCCTCCGGAGCTAAGGGAAAGAGTCAGACGCTATGATCAATACAAGTGGCTGAATACCCGAGGCGTGGACGAAGAGAGCTTGATGAAGAGCCTTCCAAAAGATTTAAGGAGAGATATCAAACGGCATCTTTGTTTGAATCTGGTTAAAAGGGTTCCTCTCTTTGCTAACATGGACGAACGCTTGCTCGATGCTATATGCGAGCGACTGAAACCTACTCTGTACACAGAGGGCACTGACATAGTTAGGGAAGGAGACCCAGTCAATGAGATGCTCTTCATCATCCGCGGTCGCCTAGAAAGTGTCACCACAGATGGTGGAAGGAGTGGATTCTTTAACAGAGGGCTTCTCAAAGAAGGAGACTTCTGTGGAGAGGAGCTACTAACATGGGCACTAGATCCAAAAGCTGCTGCAAACTTGCCATCATCTACTAGGACAGTGAAGGCCATAAATGAGGTCGAGGCATTCGCATTGGAAGCCGAGGAGCTTAAGTTTGTTGCTTCACAGTTTAGATACATTCATAGTAGGCAGGTTCAGCATACCTTCAGGTTCTACTCACAGCAATGGAGAACATGGGCTGCTATCTACATTCAAGCTGCGTGGAGGAGGTATGTGAGGAGGAAATACACTCTGCAAAGAAGGCAGGAGGAAGAGTATTATTATAAGTCTGATGACAGCGGCGATGATGACAGTGGTGGTGATTCTGCAAAGGCCTTAGTTAAACGTTCCTCGAGTTCATCTAGCTTTGCCACAGCCATGTATGCTACACGCTTTGCCGCGAATGCACTTCGCGCTCATAGGCTTCGCGAAGCAGGTAGTTCCAGTAATCTAGGAAGAATTCAAAAACCGCCTGAACCTGACTTCAGTGCTTATGGTCCACAGTGA 954 0.4738 MSVHLDEMRIQRRDSELWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLMKSLPKDLRRDIKRHLCLNLVKRVPLFANMDERLLDAICERLKPTLYTEGTDIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRYIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRYVRRKYTLQRRQEEEYYYKSDDSGDDDSGGDSAKALVKRSSSSSSFATAMYATRFAANALRAHRLREAGSSSNLGRIQKPPEPDFSAYGPQ 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271869g00009 317 Gene3D Jelly Rolls 75 195 IPR014710 -
Stsc271869g00009 317 ProSiteProfiles IQ motif profile. 213 241 IPR000048 GO:0005515
Stsc271869g00009 317 ProSiteProfiles cAMP/cGMP binding motif profile. 77 160 IPR000595 -
Stsc271869g00009 317 FunFam Cyclic nucleotide-gated ion channel 1 4 68 - -
Stsc271869g00009 317 MobiDBLite consensus disorder prediction 295 317 - -
Stsc271869g00009 317 Gene3D Helix hairpin bin 5 68 - -
Stsc271869g00009 317 SMART cnmp_10 77 208 IPR000595 -
Stsc271869g00009 317 CDD CAP_ED 77 208 IPR000595 -
Stsc271869g00009 317 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 311 - -
Stsc271869g00009 317 SUPERFAMILY cAMP-binding domain-like 8 197 IPR018490 -
Stsc271869g00009 317 FunFam Cyclic nucleotide-gated ion channel 1 75 193 - -
Stsc271869g00009 317 Pfam Cyclic nucleotide-binding domain 98 187 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271869g00009 Stsc-Chr271869 32907 33972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271869g00009 1 313 Ion Channels AT1G15990 75.796 1.73e-164 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271869g00009 K05391 - gmx:100815308 469.929