Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271868g00036 ATGTCACTCCACGCTTTCAAGGAAACTCTACTAAGACCTTGCACCGCAACTCAACAACAATCTTCAACTTCTTCTTCTTCTTCGCTTTCAATTTCCCAAACCCAAACCCGCCCTTACTCAATTCTTCACGACTCACACCTTCCCATCTCAAGAAAACCCCCAAAATCCTCTCTTTCCCAGCAGCTTCGCCGCCTCCAAGAAGACGACACCGACGCCGACGCCAACGACCACGCCTTCTCTGGCCCGCCGCTTCGGCTCCACAATTCGGTTAAGAAGCCAGAGCAGGAAGAGAAAATTCGTGAAGAAGAAAAAGAAGATGGTGTTGGTGATGACGACGAAGAAGAAGAAGAACATAAGGAGCTGCAGGTGAAGAGGGGCAAATTCGGAAGAGCGAAAATTTCACAGTTTCAGTTCGAACACATAGGACCGTTTGAGCCTCTAGTCCTTTCATCAGATGGAAAAGTTCCAGTCGTTCAGGTTCCCGCATCTATAAATTGTAGACTGCTTGAGCATCAGAGAGAGGGAGTGAGATTTCTGTATGGTTTGTACAAGAACAATCATGGAGGTATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCTATCTTTGGTAAGGAAAGAGATTCTATACTGGGTGAAAACCATGAAGAGAAGAGAGACCCTGTATTGATAATCTGTCCAACTTCTGTCATTCACAACTGGGAGGGTGAGTTCTCTAAGTGGGCTAACTTCAGTGTATCCATTTATCATGGTGCAAACCGGGATCTGATACATGAGAAACTAGAAGCAAATGGAGTGGAGATACTTATTACAAGTTTTGACACTTACAGAATTCATGGAAGTTCCTTGTCAGATTTCAAATGGAGCATTGTGATTGTTGATGAGGCTCACCGGCTTAAGAATGAGAAATCAAAACTCTATCAAGCATGTTTAGAAATTAAAACCCTGAGACGTTATGGTCTTACTGGGACCATAATGCAAAATAAGATAATGGAGTTGTTTAATCTCTTTGATTGGGTTGCACCTGGATCACTTGGGACACGGGATCACTTTCGTGAGTTCTATGATGAACCCCTTAAGCATGGTCAGAGGTCATCTGCTCCTGAAAAGTTTGTCCAAATTGCTAATAGAAGAAAACAACACCTTGTGAATGTTCTTCATAAATATTTGTTGAGAAGGACAAAGGAAGAGACTATTGGACATCTTATGATGGGGAAGGAAGATAACATCGTGTTCTGTGCTATGAGTGATTTGCAAAGACGTGTTTACAAGAGAATGTTACAGCTTCCTGATATCCAATGCCTTATAAATAAGGACCTGCCTTGTAGTTGTGGTAGCCCACTTACACAGGTTGAATGTTGTAAGAGGACAGTACCAGATGGAATTATTTGGCCTTACCTTCACCGAGATAACCCTGATGGTTGTGATTCATGCCCTTTTTGCATTGTCCTTCCATGCCTTGTAAAGCTTCAACAGATAAGCAATCACCTTGAGTTGATTAAACCAAACCCCAAAGATGACCCAGACAAGCAAAGCAAAGACGTAGAGTTTGCTGCTGCTGTCTTTGGCTCCGATATTGATTTGGTTGGTGGGAATATGCAGAGTGAGAGTTTCATGGATCTAAGTGATGTGAAACATTGCGGAAAAATGAGAGCACTTGAAAAACTTCTGTACTCATGGATTTCACATGGCGACAAAGTTCTTTTGTTTAGCTATTCAGTGAGGATGCTTGACATACTGGAGAAATTTCTCATACGGAAAGGCTACTGCTTCTCAAGACTTGATGGGTCTACTCCAATGAATTTGCGCCAGTCTTCAGTTGATGATTTCAACTCTAGTCCTAGCAAACAATGCAAACCGGGTTGTAATATTTGA 1899 0.425 MSLHAFKETLLRPCTATQQQSSTSSSSSLSISQTQTRPYSILHDSHLPISRKPPKSSLSQQLRRLQEDDTDADANDHAFSGPPLRLHNSVKKPEQEEKIREEEKEDGVGDDDEEEEEHKELQVKRGKFGRAKISQFQFEHIGPFEPLVLSSDGKVPVVQVPASINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAIFGKERDSILGENHEEKRDPVLIICPTSVIHNWEGEFSKWANFSVSIYHGANRDLIHEKLEANGVEILITSFDTYRIHGSSLSDFKWSIVIVDEAHRLKNEKSKLYQACLEIKTLRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTRDHFREFYDEPLKHGQRSSAPEKFVQIANRRKQHLVNVLHKYLLRRTKEETIGHLMMGKEDNIVFCAMSDLQRRVYKRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRTVPDGIIWPYLHRDNPDGCDSCPFCIVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDVEFAAAVFGSDIDLVGGNMQSESFMDLSDVKHCGKMRALEKLLYSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPMNLRQSSVDDFNSSPSKQCKPGCNI 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271868g00036 632 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 351 IPR014001 -
Stsc271868g00036 632 MobiDBLite consensus disorder prediction 89 105 - -
Stsc271868g00036 632 SMART ultradead3 164 359 IPR014001 -
Stsc271868g00036 632 MobiDBLite consensus disorder prediction 1 123 - -
Stsc271868g00036 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 401 IPR027417 -
Stsc271868g00036 632 Gene3D - 146 400 IPR038718 -
Stsc271868g00036 632 Gene3D - 413 627 IPR027417 -
Stsc271868g00036 632 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 297 306 IPR002464 -
Stsc271868g00036 632 CDD SF2_C_SNF 551 626 - -
Stsc271868g00036 632 MobiDBLite consensus disorder prediction 12 41 - -
Stsc271868g00036 632 PANTHER SNF2/RAD54 FAMILY MEMBER 31 625 - -
Stsc271868g00036 632 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 149 400 - -
Stsc271868g00036 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 622 IPR027417 -
Stsc271868g00036 632 Pfam SNF2-related domain 184 441 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271868g00036 Stsc-Chr271868 275076 282092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271868g00036 168 404 RAD5 or RAD16-like Gene Family AT1G11100 28.470 2.49e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc271868g00036 SNF2_N 3.5e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271868g00036 K20098 - gmx:100781003 965.296