Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271868g00030 ATGGCATTGCCTTCATCTTCTTCTTCCTCCTTTACCACTTGTGTTCTATTCCTCTTTCTTCTAACTCTCTCTTGCTTCTTCAATAACCTTAATGCAAAGCATAATGTAGCCACCAATCACAACCGTCGCCACCACCACCACCACACCCAGAACACCCCATTGAACTCGAGGCTCGATCAGGCCTTTCTTGCGCTGCAAGCATGGAAGAATGTGATCTACTCTGACCCAAAAAACTTCACTGCCAATTGGGTAGGTCCTTCAGTTTGCAATTACACAGGTGTGTATTGTGCTCCATCTCAGGATAACTCTAAAGAGACAGTTGTAGCAGGCATTGACCTTAACCACGGCGACATAGCCGGATTCCTACCGACCGAATTAGGCCTCCTAGCCGACCTTGCTCTCCTCCATCTAAACAGCAATCGCTTTTGTGGCATCCTCCCAAGATCACTAAGCAACCTCACTCTGCTTCATGAGCTTGATCTTAGCAACAATAGATTTGTTGGACCTTTTCCTGTGGTTGTCCTTTCCCTTCCTTCCCTAAGATACCTTGATATCCGGTTCAACGAATTCGAAGGGCCATTGCCTGTTGATCTCTTCAACAAAAGCTTTGATGCAATATTTCTCAACAACAACCGTCTCAGCAGTTCCATTCCCCGAAATTTCGGCCGAAGCTCGGCCTCTGTCCTGGTCTTTGCCAATAACAGATTTGGAGGTTGTCTTCCAGAAAGCATAGTAAACTTAGCTGAAACATTGGAAGAGCTTGTCATGATCAACACCAGTTTATCAGGTTGTTTGCCACAGCAAGTTGGATTTCTCTACANNNNNNNNNNAATTGTTGGACCCATACCTTATAGCCTTGCAGGGCTTTCTCATTTGGAGCAGTTGAATTTGGCTCACAATCTCATGACAGGAATAGTCCCTATGGGAGTTTGTGAGCTTCCAAACTTGGAAAATTTCACATTCTCATATAACTTCTTCTGTGAGGAAGAGGGTATTTGCCAGAACTTGACATCGAAAAGAATCGTCTTCGATGATCACCGCAACTGTTTGCCGGAGAAGCCGCTGCAGAGGAGCAAGAAGGAGTGCAATGCTGTGAATGAAAACCCTGTTGACTGCATAGAGCTTTGTTGTACAACAGAAGGTGGTTTTGGAAACAATGTCACAACTTCAAGCTCAGTGCCAACAATGCCTATTTCCGCACCTCCTTTTATTGCACCAAGCCACCCATGA 1230 0.4496 MALPSSSSSSFTTCVLFLFLLTLSCFFNNLNAKHNVATNHNRRHHHHHTQNTPLNSRLDQAFLALQAWKNVIYSDPKNFTANWVGPSVCNYTGVYCAPSQDNSKETVVAGIDLNHGDIAGFLPTELGLLADLALLHLNSNRFCGILPRSLSNLTLLHELDLSNNRFVGPFPVVVLSLPSLRYLDIRFNEFEGPLPVDLFNKSFDAIFLNNNRLSSSIPRNFGRSSASVLVFANNRFGGCLPESIVNLAETLEELVMINTSLSGCLPQQVGFLYXXXXIVGPIPYSLAGLSHLEQLNLAHNLMTGIVPMGVCELPNLENFTFSYNFFCEEEGICQNLTSKRIVFDDHRNCLPEKPLQRSKKECNAVNENPVDCIELCCTTEGGFGNNVTTSSSVPTMPISAPPFIAPSHP 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271868g00030 409 Gene3D Ribonuclease Inhibitor 61 174 IPR032675 -
Stsc271868g00030 409 Gene3D Ribonuclease Inhibitor 276 339 IPR032675 -
Stsc271868g00030 409 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 385 - -
Stsc271868g00030 409 FunFam Leucine-rich repeat extensin-like protein 1 62 223 - -
Stsc271868g00030 409 Gene3D Ribonuclease Inhibitor 175 275 IPR032675 -
Stsc271868g00030 409 Pfam Leucine rich repeat 132 189 IPR001611 GO:0005515
Stsc271868g00030 409 Pfam Leucine rich repeat N-terminal domain 59 96 IPR013210 -
Stsc271868g00030 409 SUPERFAMILY L domain-like 61 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271868g00030 Stsc-Chr271868 256348 257690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271868g00030 14 377 Trihelix Transcription Factor Family AT3G19020 50.388 1.77e-127 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271868g00030 - - aip:107632616 684.485