LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271868g00030	ATGGCATTGCCTTCATCTTCTTCTTCCTCCTTTACCACTTGTGTTCTATTCCTCTTTCTTCTAACTCTCTCTTGCTTCTTCAATAACCTTAATGCAAAGCATAATGTAGCCACCAATCACAACCGTCGCCACCACCACCACCACACCCAGAACACCCCATTGAACTCGAGGCTCGATCAGGCCTTTCTTGCGCTGCAAGCATGGAAGAATGTGATCTACTCTGACCCAAAAAACTTCACTGCCAATTGGGTAGGTCCTTCAGTTTGCAATTACACAGGTGTGTATTGTGCTCCATCTCAGGATAACTCTAAAGAGACAGTTGTAGCAGGCATTGACCTTAACCACGGCGACATAGCCGGATTCCTACCGACCGAATTAGGCCTCCTAGCCGACCTTGCTCTCCTCCATCTAAACAGCAATCGCTTTTGTGGCATCCTCCCAAGATCACTAAGCAACCTCACTCTGCTTCATGAGCTTGATCTTAGCAACAATAGATTTGTTGGACCTTTTCCTGTGGTTGTCCTTTCCCTTCCTTCCCTAAGATACCTTGATATCCGGTTCAACGAATTCGAAGGGCCATTGCCTGTTGATCTCTTCAACAAAAGCTTTGATGCAATATTTCTCAACAACAACCGTCTCAGCAGTTCCATTCCCCGAAATTTCGGCCGAAGCTCGGCCTCTGTCCTGGTCTTTGCCAATAACAGATTTGGAGGTTGTCTTCCAGAAAGCATAGTAAACTTAGCTGAAACATTGGAAGAGCTTGTCATGATCAACACCAGTTTATCAGGTTGTTTGCCACAGCAAGTTGGATTTCTCTACANNNNNNNNNNAATTGTTGGACCCATACCTTATAGCCTTGCAGGGCTTTCTCATTTGGAGCAGTTGAATTTGGCTCACAATCTCATGACAGGAATAGTCCCTATGGGAGTTTGTGAGCTTCCAAACTTGGAAAATTTCACATTCTCATATAACTTCTTCTGTGAGGAAGAGGGTATTTGCCAGAACTTGACATCGAAAAGAATCGTCTTCGATGATCACCGCAACTGTTTGCCGGAGAAGCCGCTGCAGAGGAGCAAGAAGGAGTGCAATGCTGTGAATGAAAACCCTGTTGACTGCATAGAGCTTTGTTGTACAACAGAAGGTGGTTTTGGAAACAATGTCACAACTTCAAGCTCAGTGCCAACAATGCCTATTTCCGCACCTCCTTTTATTGCACCAAGCCACCCATGA	1230	0.4496	MALPSSSSSSFTTCVLFLFLLTLSCFFNNLNAKHNVATNHNRRHHHHHTQNTPLNSRLDQAFLALQAWKNVIYSDPKNFTANWVGPSVCNYTGVYCAPSQDNSKETVVAGIDLNHGDIAGFLPTELGLLADLALLHLNSNRFCGILPRSLSNLTLLHELDLSNNRFVGPFPVVVLSLPSLRYLDIRFNEFEGPLPVDLFNKSFDAIFLNNNRLSSSIPRNFGRSSASVLVFANNRFGGCLPESIVNLAETLEELVMINTSLSGCLPQQVGFLYXXXXIVGPIPYSLAGLSHLEQLNLAHNLMTGIVPMGVCELPNLENFTFSYNFFCEEEGICQNLTSKRIVFDDHRNCLPEKPLQRSKKECNAVNENPVDCIELCCTTEGGFGNNVTTSSSVPTMPISAPPFIAPSHP	409

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc271868g00030	409	Gene3D	Ribonuclease Inhibitor	61	174	IPR032675	-
	Stsc271868g00030	409	Gene3D	Ribonuclease Inhibitor	276	339	IPR032675	-
	Stsc271868g00030	409	PANTHER	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED	19	385	-	-
	Stsc271868g00030	409	FunFam	Leucine-rich repeat extensin-like protein 1	62	223	-	-
	Stsc271868g00030	409	Gene3D	Ribonuclease Inhibitor	175	275	IPR032675	-
	Stsc271868g00030	409	Pfam	Leucine rich repeat	132	189	IPR001611	GO:0005515
	Stsc271868g00030	409	Pfam	Leucine rich repeat N-terminal domain	59	96	IPR013210	-
	Stsc271868g00030	409	SUPERFAMILY	L domain-like	61	348	-	-

Showing 1 to 8 of 8 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271868g00030	Stsc-Chr271868	256348	257690	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271868g00030	14	377	Trihelix Transcription Factor Family	AT3G19020	50.388	1.77e-127	388

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271868g00030	-		-	aip:107632616	684.485

Showing 1 to 1 of 1 entries