Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271868g00024 ATGACTGGTACTGGCAGAGAAATTCTCCACAAGATAAAGGCAAAAGCAGGGTTTGGAACATTGACGCCAAACACATGTACAGGGAAAGGAAAAAGCAAGATGTCAAAGCACATTACACATGGCTTCCATTTGGTTAAGGGAAAATCAACTCACCCTATGGAAGATTATCTGGTTTCAGAATTTAAGCATGAGAATGACAGAGAATTAGGATTGTTTGCTATCTTTGATGGCCATTTAGGCCATGATGTTGCTAGCTATTTGCAAAACCACCTTTTACACAACATCTTAAACCAGCATGACTTCTGGAGCGACACAGAAAGCGCAGTGAAGAGATCATATCTTGAAACAGATGAGAAAATATTGGAGCAAGCACTTGTCTTGGGGCGGGGAGGATCCACGGCTGTTACAGCAATACTAATCGACGGCCAAAAGCTCGTGGTAGCTAACGTCGGCGACTCGCGAGCCGTCATTTGCGAAAACGGGAAGGCCAAGCAGCTATCAGTTGATCATGAACCAAGCAGGGAGAAGAAATCTATTGAGAAACGTGGTGGTTTTGTATCAAATATTCCAGGGGATGTCCCTCGTGTAGATGGACAGCTAGCAGTAGCAAGGGCTTTTGGTGACAAGAGCTTGAAGATGCATCTCAGTTCAGAACCTGATGTGTTCATAGTTCATGTTGATCACCACACCGAATTCCTTATTCTTGCAAGTGATGGAATATGGAAGGTTATGTCAAACCAAGAAGCTGTGGATTCCATTAAACAAATTAAGGATGCTGATGCTGCAGCAAAACACTTGATACAAGAGGCTGTTTCCAAGAAAAGCAAGGATGACATTTCCTGCATAGTTGTGAGGTTCCAATGA 864 0.4329 MTGTGREILHKIKAKAGFGTLTPNTCTGKGKSKMSKHITHGFHLVKGKSTHPMEDYLVSEFKHENDRELGLFAIFDGHLGHDVASYLQNHLLHNILNQHDFWSDTESAVKRSYLETDEKILEQALVLGRGGSTAVTAILIDGQKLVVANVGDSRAVICENGKAKQLSVDHEPSREKKSIEKRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKMHLSSEPDVFIVHVDHHTEFLILASDGIWKVMSNQEAVDSIKQIKDADAAAKHLIQEAVSKKSKDDISCIVVRFQ 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271868g00024 287 PANTHER PROTEIN PHOSPHATASE 34 286 IPR015655 GO:0004722|GO:0006470
Stsc271868g00024 287 FunFam Probable protein phosphatase 2C 39 29 287 - -
Stsc271868g00024 287 Pfam Protein phosphatase 2C 50 279 IPR001932 -
Stsc271868g00024 287 SUPERFAMILY PP2C-like 33 286 IPR036457 -
Stsc271868g00024 287 Gene3D - 34 287 IPR036457 -
Stsc271868g00024 287 SMART PP2C_4 34 284 IPR001932 -
Stsc271868g00024 287 CDD PP2Cc 40 286 IPR001932 -
Stsc271868g00024 287 SMART PP2C_SIG_2 50 286 IPR001932 -
Stsc271868g00024 287 ProSiteProfiles PPM-type phosphatase domain profile. 39 286 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271868g00024 Stsc-Chr271868 184739 187657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271868g00024 28 286 PP2C-type Phosphatase Gene Family AT4G28400 75.676 1.35e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271868g00024 K17506 - gmx:100819846 470.7