Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271868g00018 ATGACCAGGGTTTGCAACCTTCACCTTCACCCTTCCCACCAACTCCTCTCTCTCCAGAAATCCCTAAGACACATCGACATTCCCCCTAGGAAGCTCCTTGCTCGCCGCTCCGCCGCCAATCACGACGGATCTGCTGACATCTTCTCCGACGACACGCTCCTCCACAATTACCTCCCTCACAACACCCTCGCAGATTCCTCCGACGATGACTCCGACGACCCCTACTCCTCCGACCATTTCCGCATGTACGAGTTCAAGGTTCGGCGTTGCACTCGCAGCCGGAGCCACGACTGGACCGACTGCCCCTTCGCCCACCCGGGCGAAAAGGCACGCCGTCGCGATCCACGGCGGTTCCACTACACCGGAACAGTGTGTCCCGATTATCGCCGTGACGGCACGTGCCGACGCGGCGATGGGTGTGAATTCGCGCACGGTGTTTTCGAGTGCTGGCTGCACCCGGCTCGGTACAGAACGGAGGCATGCAAGGACGGGAAGAGCTGCAAGAGGAAGGTGTGTTTCTTCGCCCACACGCCTCGCCAATTGAGGGTTCTTCCATCGAATCTGATGAACGCACAAAACGACACCGTTTCGTGCAAGAACTGTAAGAGCCACATCAAAAAGAGTAATAATAACCACTGCTGTTTGTTGTGTCACTCTTGCACTTGTTCTCCAACTTCTACCTTGTTTGGCATTTCACATTTTTCACCGCCGATTTCACCTTCTTCTCAACCTTTTCACCATCATCATGGACATGGCGGTGTTAATGTGAGCTACAATAAGGATGTGGCAACTGAGATTCTGTCTTCATTTGAGGGTTTGAATTTCGGCGGTGAAACTGCTGCTTCTAATCATTTGTCACCTTCTACGTTTAAGGGGCAAAATAGTAATAACAATAATAATGTGATGCCTTGGATTTCTGACATTTGCTGCGAGGATCATCAGAATATTCAGAATAATAATAAGCAGCACTTCATTCCTTCACCCACTGTCTCTTCTTCTCATTCGATGAGCTTCTCTAATAACGGCGGCAACTTGTTCAGGGATGGGAGGAATTTCAAGGGTGTTGATGACGTCAGCGTGTCGTCATGGGCAACTCCAGATCTCGGGTGGGTCAACGACTTGCTGACGTAA 1131 0.5137 MTRVCNLHLHPSHQLLSLQKSLRHIDIPPRKLLARRSAANHDGSADIFSDDTLLHNYLPHNTLADSSDDDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYTGTVCPDYRRDGTCRRGDGCEFAHGVFECWLHPARYRTEACKDGKSCKRKVCFFAHTPRQLRVLPSNLMNAQNDTVSCKNCKSHIKKSNNNHCCLLCHSCTCSPTSTLFGISHFSPPISPSSQPFHHHHGHGGVNVSYNKDVATEILSSFEGLNFGGETAASNHLSPSTFKGQNSNNNNNVMPWISDICCEDHQNIQNNNKQHFIPSPTVSSSHSMSFSNNGGNLFRDGRNFKGVDDVSVSSWATPDLGWVNDLLT 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271868g00018 376 SUPERFAMILY CCCH zinc finger 118 149 IPR036855 GO:0046872
Stsc271868g00018 376 ProSiteProfiles Zinc finger C3H1-type profile. 120 147 IPR000571 GO:0046872
Stsc271868g00018 376 SMART c3hfinal6 119 146 IPR000571 GO:0046872
Stsc271868g00018 376 SMART c3hfinal6 155 178 IPR000571 GO:0046872
Stsc271868g00018 376 PANTHER UNKEMPT FAMILY MEMBER 52 375 IPR045234 -
Stsc271868g00018 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 145 IPR000571 GO:0046872
Stsc271868g00018 376 Gene3D - 119 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271868g00018 Stsc-Chr271868 122314 123444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271868g00018 75 252 C2H2 Transcription Factor Family AT5G12850 50.279 1.91e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc271868g00018 zf-CCCH 7.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271868g00018 K23047 - gmx:100820375 355.91