Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271868g00004 ATGAAAACCCCTCCTTCTATGGCTTTGAAAGAAAAGAAGACCACTACCGCCACCAAGAACAAGATCAATGGCGTAGCCATTAACAACGATAACAAAAAAGAGCTTCATTACAGGGGCGTCCGTAAGAGGCCATGGGGCCGTTACGCCGCCGAGATCAGGGATCCGGGGAAGAAGAGCCGCGTCTGGCTCGGTACATTCGACACCGCCGAGGAAGCTGCCATGGCTTACGACGCCGCCGCAAGACAGTTCCGCGGCTCCAAAGCCAAGACGAACTTCCCTCTCGCTTCTTCTCCCAACGAAAACGCCAACCTCAACATCAACAAGAATAATAATAGCGCCGGCGACAGTCCTAGCCAGAGCAGCACTATTGAGTCATCCACGCCGGAGCGTGAGGTCACGCGCCGCCGCGACGTCACGGTGATGGAGCGGTTTCCGTTCCTCCCGTTGCAGCAGCCGCTTCCGCCGCCGCATCACCAGCTCGTGCCGTTTGGCGTTGCCGGCGGTGCCGTTGTTGATGGCGTGGTGGCTCCCGTACGACCGGTTTTCTTTTTAGATCCCACCGTCGCTCGGGCTGAGTTCTTTGGACAAAGCTTTCCCGTCCGGTTCGAACCCGGTCCGTACGAGATTCGGACCGGGTTTGGAAGTTCGGCTCAGAGTGACTCGGACTCCTCCTCCGTCGTTGATTGCCAGCCCAAGAGAGAGCTCAATCTGGATCTAAACCTAGCTCCGCCAATGGATGCCTAA 744 0.5726 MKTPPSMALKEKKTTTATKNKINGVAINNDNKKELHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAMAYDAAARQFRGSKAKTNFPLASSPNENANLNINKNNNSAGDSPSQSSTIESSTPEREVTRRRDVTVMERFPFLPLQQPLPPPHHQLVPFGVAGGAVVDGVVAPVRPVFFLDPTVARAEFFGQSFPVRFEPGPYEIRTGFGSSAQSDSDSSSVVDCQPKRELNLDLNLAPPMDA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271868g00004 247 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Stsc271868g00004 247 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Stsc271868g00004 247 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Stsc271868g00004 247 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 187 - -
Stsc271868g00004 247 FunFam Ethylene-responsive transcription factor 2 36 94 - -
Stsc271868g00004 247 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Stsc271868g00004 247 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Stsc271868g00004 247 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Stsc271868g00004 247 MobiDBLite consensus disorder prediction 90 127 - -
Stsc271868g00004 247 MobiDBLite consensus disorder prediction 90 137 - -
Stsc271868g00004 247 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Stsc271868g00004 247 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271868g00004 Stsc-Chr271868 34880 36146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271868g00004 32 245 AP2-EREBP Transcription Factor Family AT5G44210 48.387 1.96e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc271868g00004 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271868g00004 K09286 - gmx:100801924 208.764