Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271867g00044 ATGGAAGCTGACGCAGCCATTAAAGAAAGCGAGCAAAACGATGATGAAATCTCTGATTCCTTTGTTTGCTGTGTTTGCCTGGAACTGTTGCACAAGCCCATTGTTCTAGCGTGTGGTCATCTATCTTGTTTCTGGTGTGTCCATAAATCAATGGATATTATACGCGAGTCTCATTGTCCGATTTGTAGGCAATCATACTATCACTTTCCAACGATATGTCAAATGCTTCACTTTTTGCTTCTTAAGCTGTATCCGGATGCTTACAAGAGAAGGTTACATCAGGTGCTTGAGGAAGAAAAGGAATTGGGATGTTTCTCTCCTCAATTTGATGCTGATACATGTGGATCACAATCTAAAACTGATAATCCTAGGAGTTCACCTTCTGGCGCTACTAAAGATTCCTTGTTCAGCTCAAGCAACTTGGAATCTTGTGAGTGTAAGGAACAATCAGGCTCTTCAAATCATGAAGGAAAAGAAGGTGCAATCATTTCTGAGGACACATCCAATAGAACACCTGAGGTTATGGGAACTCCTTCCATTGAAGGGAAAGAAGTACCTGAGAATGACAAGCACAATCAGCAACAGAAAATAACAATTGCAGATGTCATTTGTACAAAGTGCAATCAAATGCTTTTTCATCCTATTGTTCTTAATTGTGGTCATGTATTCTGTGAAGCTTGCATGATGAACTTAGATGATCAGGTGCTTAAATGCCAAGTTTGTCAAAGTCTGCATCCAAGAGGATTTCCAAAAGTTTGTTTGGCCCTTGATCACTTTTTGGAGGAAAAATTTCCAGAAGAATATGCAAAGCGTAGAGATGCTGTTCAATTTAGCCAAGTCAAAGTCAAGCCTGAGATCTCATCTTGTTCATCAGGGGATGGTGGAGCAAAATCGACCAATCAATTATCTGGTCTTCTATCAAGAATTCACATAGGAGTTGGATGTGATTTTTGTGGGATGTATCCGATTATCGGGGAGAGATATAAATGCATTGACTGTAAGGAGGATATCGGTTTTGATCTTTGTGGTGATTGCCATAAAACGCATTCAAAGCTTCCAGGCCGATTCAGTCAGCAGCACACTCCTGAGCACAGGTTTGAGTCTGTACCAGGTTTTAGATCAGTTGGGGGGTGGTATGCACACGAGTCTCTGGAAATTTCAGAACATATACCCGAAGATATCAGTATGTCCAACGAAAATGATGAAGATAACCAGAATGAAAATGGAGCCCCCCTCTGA 1239 0.4084 MEADAAIKESEQNDDEISDSFVCCVCLELLHKPIVLACGHLSCFWCVHKSMDIIRESHCPICRQSYYHFPTICQMLHFLLLKLYPDAYKRRLHQVLEEEKELGCFSPQFDADTCGSQSKTDNPRSSPSGATKDSLFSSSNLESCECKEQSGSSNHEGKEGAIISEDTSNRTPEVMGTPSIEGKEVPENDKHNQQQKITIADVICTKCNQMLFHPIVLNCGHVFCEACMMNLDDQVLKCQVCQSLHPRGFPKVCLALDHFLEEKFPEEYAKRRDAVQFSQVKVKPEISSCSSGDGGAKSTNQLSGLLSRIHIGVGCDFCGMYPIIGERYKCIDCKEDIGFDLCGDCHKTHSKLPGRFSQQHTPEHRFESVPGFRSVGGWYAHESLEISEHIPEDISMSNENDEDNQNENGAPL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271867g00044 412 FunFam E3 ubiquitin-protein ligase PRT1 305 369 - -
Stsc271867g00044 412 FunFam E3 ubiquitin-protein ligase PRT1 14 109 - -
Stsc271867g00044 412 SUPERFAMILY RING/U-box 308 368 - -
Stsc271867g00044 412 ProSiteProfiles Zinc finger RING-type profile. 204 242 IPR001841 -
Stsc271867g00044 412 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Stsc271867g00044 412 SUPERFAMILY RING/U-box 16 73 - -
Stsc271867g00044 412 MobiDBLite consensus disorder prediction 149 163 - -
Stsc271867g00044 412 ProSiteProfiles Zinc finger RING-type profile. 23 63 IPR001841 -
Stsc271867g00044 412 FunFam E3 ubiquitin-protein ligase PRT1 191 287 - -
Stsc271867g00044 412 Gene3D - 305 369 IPR043145 -
Stsc271867g00044 412 ProSiteProfiles Zinc finger ZZ-type profile. 310 374 IPR000433 GO:0008270
Stsc271867g00044 412 MobiDBLite consensus disorder prediction 115 148 - -
Stsc271867g00044 412 Pfam Zinc finger, ZZ type 310 350 IPR000433 GO:0008270
Stsc271867g00044 412 MobiDBLite consensus disorder prediction 390 412 - -
Stsc271867g00044 412 MobiDBLite consensus disorder prediction 115 192 - -
Stsc271867g00044 412 SMART ring_2 204 241 IPR001841 -
Stsc271867g00044 412 SMART ring_2 23 62 IPR001841 -
Stsc271867g00044 412 Pfam RING-type zinc-finger 204 235 IPR027370 -
Stsc271867g00044 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 271 IPR013083 -
Stsc271867g00044 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 91 IPR013083 -
Stsc271867g00044 412 PANTHER UNCHARACTERIZED 9 403 - -
Stsc271867g00044 412 SUPERFAMILY RING/U-box 198 245 - -
Stsc271867g00044 412 Pfam Zinc finger, C3HC4 type (RING finger) 22 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271867g00044 Stsc-Chr271867 300216 306142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271867g00044 6 63 C3H Transcription Factor Family AT1G74990 40.678 1.59e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271867g00044 - - gmx:100782681 475.707