Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271867g00013 ATGTATGAGCCCCTTCTAAGCCTCTTCTCCAGCAAAGGAGAAAAAGCACATTCACCAAGCACACAAACATCACACAATGAACAATGTCAACATGATCATGTTCTTGCTGCTCCTTCACTGAGCCAATCCACGTCTCCTTACATAAACCTCATCGCAAACTTGAGCATCAAGAAAAGGAAGATTGTCCATCGCTCACGTTCTGCACCAACTGTACTAGTCACCGACACTGCCATAGACTTTGATGAGCCCTCTGAACCTAGATCTATACAAAAGTCATCAACCTTAATAGTAAAGGTATCTTTCATCTCTGTATTCTTGTATTTGGCAATAGGTGTTGCAGTGTACATGATAAATGGGAGTTTTAAGGGTACTACTACACTTATGCCTATAGATGCTATATACTTTACAGTTGTAACTCTATGCACAATTGGATATGGAGATATTGTTCCTGATGCTACATCTACCAAAATCTTTACATGTGGTTTCATTTTGGTTGGTTTCGGACTTATCGGTTTTCTCCTTAGCGGCTTGGTTGAATACATCTGCGATGCTCAAGAAGCATTCACATTGAGTATGATTGATGAGAATAGATATGAGAGAATTCTATGGACCTACATAGTTGATGAAGAGAAAGGAAGAATGCGGATTCGAACAAAAGTTTCTTTAGCTTTGGTTGTTGTCATTGGTTGCATCACAATAGGAGCAGTTACAGCTCACTTTCTTGAGGGTATGGATTGGATAGGCAGTTTCTATCTCTCCATTACTTCTGTTACGACAGTTGGTTATGGCGATTATTCTTTCAAAACTGTAACTGGAAGATGCTTTGCGATCATATGGCTTTTGGTAAGTACATTGGCAGTTGCTAGAGCCTTTCTGTACCTCACTGATTATAGCATGCACAAGAGGAAACGTAAGATGGCAAAATTGGTTCTTCATAAGAAGATAACATTGTCAGATTTAGTAGCTGCAGACCTTGATAAGGATGGATCAATAAGTAAGTCCGATTTTGTTATCTACAAGCTCAAGCAAATGGGAAAAATAACTGAGATTGACATTCTGCAAATAAGCAAACAATTTGATTCCATGGGTTGTGGCATACATGGCAAGATTAGTGTTGCTGACCTTATGGAAACTGTCTAA 1140 0.3912 MYEPLLSLFSSKGEKAHSPSTQTSHNEQCQHDHVLAAPSLSQSTSPYINLIANLSIKKRKIVHRSRSAPTVLVTDTAIDFDEPSEPRSIQKSSTLIVKVSFISVFLYLAIGVAVYMINGSFKGTTTLMPIDAIYFTVVTLCTIGYGDIVPDATSTKIFTCGFILVGFGLIGFLLSGLVEYICDAQEAFTLSMIDENRYERILWTYIVDEEKGRMRIRTKVSLALVVVIGCITIGAVTAHFLEGMDWIGSFYLSITSVTTVGYGDYSFKTVTGRCFAIIWLLVSTLAVARAFLYLTDYSMHKRKRKMAKLVLHKKITLSDLVAADLDKDGSISKSDFVIYKLKQMGKITEIDILQISKQFDSMGCGIHGKISVADLMETV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271867g00013 379 Pfam Ion channel 226 297 IPR013099 -
Stsc271867g00013 379 Pfam Ion channel 103 181 IPR013099 -
Stsc271867g00013 379 FunFam Two-pore potassium channel 2-like 198 322 - -
Stsc271867g00013 379 Gene3D - 85 200 - -
Stsc271867g00013 379 Gene3D - 207 320 - -
Stsc271867g00013 379 PRINTS Two pore domain K+ channel signature 258 267 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc271867g00013 379 PRINTS Two pore domain K+ channel signature 138 166 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc271867g00013 379 SUPERFAMILY Voltage-gated potassium channels 93 181 - -
Stsc271867g00013 379 SUPERFAMILY Voltage-gated potassium channels 197 314 - -
Stsc271867g00013 379 ProSitePatterns EF-hand calcium-binding domain. 324 336 IPR018247 -
Stsc271867g00013 379 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 61 150 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271867g00013 Stsc-Chr271867 98414 99922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271867g00013 62 377 Ion Channels AT4G18160 48.580 2.28e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271867g00013 K05389 - gmx:100789639 506.523