Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271867g00011 ATGGCTCTGGCTGGTTCCTCTGCCCATGCATGGACATACGATGTGTTTATTAGTTTCAGAGGCCAAGATACTCGCTACAGTTTTACGGGCTATCTTTATGAAGCTCTTTGTAATAAGGGAATCCACACCTTCATTGATGATGAGGAGCTTCCAAAAGGAGACGAAATCACACCCTCACTTCTTAGCACAATTCAAGAGTCTAGGATTTCCATCCTTATTGATCCTTTCGATGTTCGCCATCTAAATAAGAGTTTCGGAGAGGCTATCGCTAAGCATGAGGAGAGATTCAAGAATGACATGAACAAGGTGCAAAAATGGAAGAAGGCTCTGCATCAAGTAGCTAATTTGTCTGGCTATCATTTCAAAGATGGGGATGGATATGAACATGAGTTTGTTAGAAATATTGTGGAAGACATTTCAAGAAAGATTAGGCACGTACCTTTGCTTGTTGCTGATTATCCAGTTGGACTAGAGTCTCGAGTGTCCGAAGTAATTTCACTTTTGGAAATCGATTCTGCTGATCGAGTTCACATGGTGGGGATACATGGAATGGGCGGAATAGGAAAAACTACTCTTGCTCTTGCTGTTTTTAACTTGATTGCTGACAATTTTGAAGGTGTGTGCTTCCTTGAAAATGTGAGAGAAAACTCAAGTAAATATGGATTGGTACATCTTCAAAATAATCTTCTTTCTAAGATATTGGGGAAGGAGGGAGTCCAAGTAGAAGGTGTTAGAGAAGGAGGCTCACAGATACAACAAAGGCTTTGTAGAAAGAAGGTTCTTTTGATTCTGGACGATGTTGATGATCGCAAGCAGCTGCAGGCTATTGCTGGAAAACTTGATTGGTTTGGTCGCGGTAGCAGAGTTATTATTACAACACGTGATGCACATTTGCTGAAATGTCATGGAGTTGAAAGCACATATAAGGTACAAGGTTTAAATAAGGAAGAGTCTCTTCAATTGCTTGTTGAAAATGCTTTTAAAAATGATGATGTTAACCCAAGTTACACGGATGTTTTAATCCGCGCAATAACTTACGCCTCCGGGCTTCCATTGGCTTTGGAAGTAATAGGTTCTCACTTGTTCGGGAAAGGTATTGAAGAATGGAAATCTGCATTGAATGAATTTGAAAAACATCTTGATAATAAAATTCATAAGATACTTCAAGTAAGTTTTAATGCTTTGGGAAAACAAGAGCAGAGTGTTTTTCTTGATATTGTCTGTTGTTTTAAAGGATATACATTAGTAGAAGTTACAGATATACTTCAAGCTCATTATGGGAGTTGCATGAAATATCATATTGGAGTGTTGCTTGATAAATCTCTCATAAATATCAATTGGTGTGATACAAGAGTTACCACACATGATTTGATAGAGGACATGGGGAAAGAAATTGTTCTAAAAATATCACCGAAAATGCCTGGAAAACGCAGTAGGTTATGGTTCTACGAAGATATAGTTAAAGTTTTACAAGATAATCAGGGGACTAGCGCCATTGAAATCATATATCTTGAATTTCCCTTATTTGAAAGGGAAGGAGATGAAGATTCATTGATAAAAGAGGGAAATAAAGATGTAGAAGTGAAATGGGATGGAAAAGCTTTGAAAGACATGAAAAATCTGAAAACACTTATTGTAAAAAATGGTTGTTTTTCGGAAAGTCCCAAACATCTTCCAAATAGTTTAAGAGTATTGGAATGGCGGAGATATCCTTCAAAGTATTTTCCGCTTGATTTTCAACCGAAGGAACTCTCCATATTCAAGTTGCCAGATATTCTCTTTATGTCACCCAAGTTGGATAGCTTATCCAAGGCAAGTGTTGTAAATTCTATTTCATGA 1839 0.3752 MALAGSSAHAWTYDVFISFRGQDTRYSFTGYLYEALCNKGIHTFIDDEELPKGDEITPSLLSTIQESRISILIDPFDVRHLNKSFGEAIAKHEERFKNDMNKVQKWKKALHQVANLSGYHFKDGDGYEHEFVRNIVEDISRKIRHVPLLVADYPVGLESRVSEVISLLEIDSADRVHMVGIHGMGGIGKTTLALAVFNLIADNFEGVCFLENVRENSSKYGLVHLQNNLLSKILGKEGVQVEGVREGGSQIQQRLCRKKVLLILDDVDDRKQLQAIAGKLDWFGRGSRVIITTRDAHLLKCHGVESTYKVQGLNKEESLQLLVENAFKNDDVNPSYTDVLIRAITYASGLPLALEVIGSHLFGKGIEEWKSALNEFEKHLDNKIHKILQVSFNALGKQEQSVFLDIVCCFKGYTLVEVTDILQAHYGSCMKYHIGVLLDKSLININWCDTRVTTHDLIEDMGKEIVLKISPKMPGKRSRLWFYEDIVKVLQDNQGTSAIEIIYLEFPLFEREGDEDSLIKEGNKDVEVKWDGKALKDMKNLKTLIVKNGCFSESPKHLPNSLRVLEWRRYPSKYFPLDFQPKELSIFKLPDILFMSPKLDSLSKASVVNSIS 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271867g00011 612 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 591 IPR044974 GO:0006952
Stsc271867g00011 612 Pfam NB-ARC domain 160 394 IPR002182 GO:0043531
Stsc271867g00011 612 SUPERFAMILY "Winged helix" DNA-binding domain 382 491 IPR036390 -
Stsc271867g00011 612 Coils Coil 366 386 - -
Stsc271867g00011 612 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 119 IPR035897 -
Stsc271867g00011 612 Gene3D - 140 306 IPR027417 -
Stsc271867g00011 612 Gene3D - 5 72 IPR035897 -
Stsc271867g00011 612 Gene3D - 312 396 IPR042197 -
Stsc271867g00011 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 406 IPR027417 -
Stsc271867g00011 612 PRINTS Disease resistance protein signature 178 193 - -
Stsc271867g00011 612 PRINTS Disease resistance protein signature 347 361 - -
Stsc271867g00011 612 PRINTS Disease resistance protein signature 254 268 - -
Stsc271867g00011 612 ProSiteProfiles TIR domain profile. 11 143 IPR000157 GO:0007165
Stsc271867g00011 612 SMART till_3 12 116 IPR000157 GO:0007165
Stsc271867g00011 612 Pfam TIR domain 13 73 IPR000157 GO:0007165
Stsc271867g00011 612 Gene3D - 73 139 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271867g00011 Stsc-Chr271867 93501 95574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271867g00011 155 590 WRKY Transcription Factor Family AT5G45050 31.637 1.74e-52 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271867g00011 - - aip:107644584 863.603