Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271867g00002 ATGGCAAATAGAACTCATCATCCTTCAGTGTTTCTGGTTGTGGTTACAATTTTACTTTCCCTCCATCGATCGGAGCAACGGCAATCACAGCAGTCTCTGATCCTCTTGAGAATTCAGCAGCTGTTGAATTTTCCTGTTGAAGCAAGCAACTGGAACAACAACCACATAGATTTTTGCAAGGGGGATTCAAACTCTTCTTCTCTCACTGTGGTATGCTATGAAGGAAACATAACACAGCTTCATATAACTGGTGACAGAACTGCACCACTTCCCAAGAACTTCTCAATGGATTCCTTTGTCAAAACTCTGACAAGGCTTCCAAGTTTGAAGGTCCTCACACTGGCTTCTCTTGGTGTCTGGGGTCCCTTGCCTGACAAGATTTCGCGGCTGCAATCGCTGGAAATTGTTAATGTGAGTTTCAATTTTCTGTATGGTGCCCTGCCTCGAGAGGTTTCGTCGCTGTCGAATCTCCAAACACTCATTCTTGATAACAACTTGTTTTCCGGCCGGCTTCCAAATTGGCTTGACTCGCTTTCAACCTTAAGAGTGTTAAGTTTGAAGAACAATTTATTCAATGGATCACTGCCAAATTCTCTTGGTAACTTGGAGAATTTGAGGATTCTTTCACTTTCACATAACCACTTTTTTGGGCTAGTACCTGATTTGAGCAGATTGACAAATCTTCAAGTGTTGGAACTAGATGATAATGCTTTCGGACCGCAGTTTCCACGGCTTGGTAACAAATTGGTTACTTTAGTGCTAAGGAACAATAGTTTCAGGTCTGGAATCCCTGCTGGATTGAGCTCATATTTTCAGCTCGAGCGATTAGATATTTCATCAAACACTTTTGTGGGGCCATTCCAGCCAGCATTGCTATCTCTTCCTTCAATTACCTATCTGAACATTTCTGGAAACAGATTAACAGGGAAGCTTTTTGAGAATCTGTCTTGCAATTCTGAACTTGATGTGGTGGATTTGTCCTCGAATCTCTTGACTGGTATCTTACCAAAATGCTTGATCTCAAATTCAAGTAATAGGACTATACTATATGCTAGAAATTGTTTAGAGACAAGGAATCAGACTCAGCAGCCGGCACCGTTTTGCCACACGGAAGCATTAGCAGTTGGGATATTACCTGACATAAAGAAGAAGCACAAAGAACATGTGTCTAAGGTAGTTATTTCCCTTGGCATAGTAGGTGGGACTCTTGCAGGAGTAGCACTTGCTTTGCTGATTTTCTTTCTTGTTAGAAGAAGAAATTTCAGAAGAAGAATGAAGAATCCTCCAACAAGGTTTATATCAGAGAATGCAGCTTCTGGATACACCTCTAAGTTGCTCTCTGAAGCAAGATATATATCACAAACAAAGAAGTTCGGAGCGGTAGGCCTGCCGAGTTATCGAAGTTTTTCATTGGAAGAGATTGAGGCAGCTACAAACTACTTTGACACAGCTTCTTTAATGGGTGAAGATTCTTATGGGAAGATGTACAGAGGTCAGCTGAAGAACGGTTCGCTTGTTTTCATAAGATGTGTATTACTGAAAAAGAGCAAAATATTTCTTGTCTTTGAATATGTACCGAATGGCACACTAAGGAGCTGGATCTCTGATGGTGATGCAATGAAATCAATGAGTTGGATCCAGCGCTTGGGAGCCGCGACCGGAATAGCGAAGGGAATCCAGTTTTTGCATACAGGGATTGTCCCTGGTGTATATTCAAACAATATCAACTCAGAAGATGTTCTACTGGATCAGAATCTTGTTGCAAAAATCTGTAGTTATAACCTGCCTTTGTTATCTAACATAGGAAAGATTCGGCATGGAAGTTCTTCCAGCGGATCAAAAAATTCTAGCATGAAAAAAAGTGTAAATGATGAAGATAAGTCTGATATATATGACCTTGGAGTTATTCTACTGGAACTCATTCTTGGAAGGGCAATAAAGTTAAGCAAAGATGCAGATGCTTTTAAGGAACTGTTACAAGCAACCATAGTGGCTGACGACGAAGCTCGAAGGAGAGTGATTGATCCTGCAATTCGGAAGGAATGCATGGATCAATCACTGAAGACAATGATGGAGATCTGCGTGCGGTGCCTCGCGAAAGATCCGGCAGAGAGGCCATCCATAGAAGATGTGTTATGGAACTTGCAATTTGCAGCTCAAGTTCAAGATGCATGGAGAGGGGACTCTCAGAGCAGTGAGGGAGGTTCACCTTTTGAATCTAGAAGAGTTTCCTTCCATTAA 2241 0.4163 MANRTHHPSVFLVVVTILLSLHRSEQRQSQQSLILLRIQQLLNFPVEASNWNNNHIDFCKGDSNSSSLTVVCYEGNITQLHITGDRTAPLPKNFSMDSFVKTLTRLPSLKVLTLASLGVWGPLPDKISRLQSLEIVNVSFNFLYGALPREVSSLSNLQTLILDNNLFSGRLPNWLDSLSTLRVLSLKNNLFNGSLPNSLGNLENLRILSLSHNHFFGLVPDLSRLTNLQVLELDDNAFGPQFPRLGNKLVTLVLRNNSFRSGIPAGLSSYFQLERLDISSNTFVGPFQPALLSLPSITYLNISGNRLTGKLFENLSCNSELDVVDLSSNLLTGILPKCLISNSSNRTILYARNCLETRNQTQQPAPFCHTEALAVGILPDIKKKHKEHVSKVVISLGIVGGTLAGVALALLIFFLVRRRNFRRRMKNPPTRFISENAASGYTSKLLSEARYISQTKKFGAVGLPSYRSFSLEEIEAATNYFDTASLMGEDSYGKMYRGQLKNGSLVFIRCVLLKKSKIFLVFEYVPNGTLRSWISDGDAMKSMSWIQRLGAATGIAKGIQFLHTGIVPGVYSNNINSEDVLLDQNLVAKICSYNLPLLSNIGKIRHGSSSSGSKNSSMKKSVNDEDKSDIYDLGVILLELILGRAIKLSKDADAFKELLQATIVADDEARRRVIDPAIRKECMDQSLKTMMEICVRCLAKDPAERPSIEDVLWNLQFAAQVQDAWRGDSQSSEGGSPFESRRVSFH 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271867g00002 746 ProSiteProfiles Leucine-rich repeat profile. 204 226 IPR001611 GO:0005515
Stsc271867g00002 746 SUPERFAMILY L domain-like 64 356 - -
Stsc271867g00002 746 Gene3D Transferase(Phosphotransferase) domain 1 525 732 - -
Stsc271867g00002 746 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 28 247 - -
Stsc271867g00002 746 SMART serkin_6 481 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271867g00002 746 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 525 731 - -
Stsc271867g00002 746 SUPERFAMILY Protein kinase-like (PK-like) 463 717 IPR011009 -
Stsc271867g00002 746 Pfam Leucine rich repeat 155 215 IPR001611 GO:0005515
Stsc271867g00002 746 Gene3D Phosphorylase Kinase; domain 1 452 523 - -
Stsc271867g00002 746 Gene3D Ribonuclease Inhibitor 28 244 IPR032675 -
Stsc271867g00002 746 Pfam Protein tyrosine and serine/threonine kinase 501 712 IPR001245 GO:0004672|GO:0006468
Stsc271867g00002 746 MobiDBLite consensus disorder prediction 726 746 - -
Stsc271867g00002 746 Gene3D Ribonuclease Inhibitor 245 365 IPR032675 -
Stsc271867g00002 746 ProSiteProfiles Protein kinase domain profile. 431 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271867g00002 746 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 394 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271867g00002 Stsc-Chr271867 3138 6798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271867g00002 44 737 Miscellaneous Gene Families AT3G03770 56.640 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Stsc271867g00002 PK_Tyr_Ser-Thr 2.2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271867g00002 - - gmx:100807539 1069.3