Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271867g00001 ATGGCTGAGCCACAGCGTGGTGATGCCGGTGGCGGCTCAGGAACACGGCGCAGAGGTGCGGCCGCAAAGCGTGCCATGGCGGCCGCCGCGGCGGCTGCAACATCGCCTCCATGTGGTGCATGCAAATTCTTGAGGAGGAAGTGCATTAGCGGCTGCATCTTTGCACCCCACTTTGGCTCCGACCAAGGCGCGGCTCGGTTTGCGGCCGTGCACAAGGTGTTTGGTGCGAGCAACGTGTCAAAACTGTTGTTGCATATTCCGGTGAACCGGCGGCATGAGGCGGTGGTTACCGTATCGTATGAGGCACAGGCAAGGCTGTCTGATCCGGTGTATGGTTGTGTGTCCACGATTCTTGCTTTGCAACAACAG 369 0.5962 MAEPQRGDAGGGSGTRRRGAAAKRAMAAAAAAATSPPCGACKFLRRKCISGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRHEAVVTVSYEAQARLSDPVYGCVSTILALQQQ 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271867g00001 123 MobiDBLite consensus disorder prediction 1 21 - -
Stsc271867g00001 123 ProSiteProfiles LOB domain profile. 36 123 IPR004883 -
Stsc271867g00001 123 Pfam Lateral organ boundaries (LOB) domain 37 123 IPR004883 -
Stsc271867g00001 123 PANTHER LOB DOMAIN CONTAINING PROTEIN 35 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271867g00001 Stsc-Chr271867 862 1230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271867g00001 1 123 AS2 family AT3G03760 68.345 2.91e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc271867g00001 LOB 5.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271867g00001 - - ahf:112698228 188.348