Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271866g00050 ATGATTTCAGCTATTTCGTGGATACCGAAAGGTGCTTCGAAGGCGGAGCCCATCGTAGCTGAACCTCCTTCCAAGGAAGAAATTCAGGACATAATCAACGCCGCCGCCACCAGTGGAGGAGACAGTGAAAATGAAGAAGAAGCAGGTGATGAACGCATGGATGATGCCGGTGGCGCCGTCGATGAAGTTGCGCGAGCACTCAATGTTGCTGATGCTATCGGTAAGGCTGACAAATTGGACGATATTGCCCTTGGTTTGAAGGAGCTTGACATGGAACATTACGATGATGAAGATGAAGGAGTTGAGGTTTTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGAGATGGATCCTTATATCAAAGATAAGGACGATGATGACTCTGAGGAACTTGAAGACATGATCATTAATCCAACTGATTCCGTCATTGTTTGTGCGCGCACTGAGGACGATGTCAGTCTTCTCGAGGTTCATATACTTGAGGACGTCGGTACTAGTGAGATGAACATGTATGTCCACCACGATATTATAATTCCTGCATTTCCACTATCCACAGCTTGGCTTGACTGCCTTCAAGGAAGAGAAAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCATCGATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCCGAGAAAAAGAAGAAGGGGAAGAAGAAATCAATCAAATACAAAGAGGACAGTCACACTGACTCCGTACTTGGTCTCGCCTGGAACAAAGAGTACAGGAATATACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGTTGCCGAGAAATGTGATATTACAATGGAGCATCACTCGGATAAGGTTCAAGCAGTTGCTTGGAATCATCATGCACCACAAATTCTCCTTAGTGGTTCATTTGATCATACTGTGGTCCTGAGAGATGGAAGGATGCCATCCCATTCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCGCACACTGAGCACTATTTTGTGTGTTTTGATGTTCGGACTGCAAAGTCTGAATCTACATCTGATCTGAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACATCAGTATCCTATAATGTGTCAGCACCTAATCTACTTGCTACTGGATCGATGGACAAAACGGTAAAGCTTTGGGATTTATCAAATAACCAGCCATCTGTTGTGGCATCTAAAAACTCCAACGCTGGAGCTGTATTTTCTATTTCTTTCTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGATGGAAAATTGCAAGTTTGGGACACTTTATCTGAGGCTGGTGTCTCTCGGCGATATGAAAGTTACAAGAAGAATAGAAGTCAGTCTCAGTCGTGA 1431 0.4423 MISAISWIPKGASKAEPIVAEPPSKEEIQDIINAAATSGGDSENEEEAGDERMDDAGGAVDEVARALNVADAIGKADKLDDIALGLKELDMEHYDDEDEGVEVFSSGIGDLYYPSNEMDPYIKDKDDDDSEELEDMIINPTDSVIVCARTEDDVSLLEVHILEDVGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKKGKKKSIKYKEDSHTDSVLGLAWNKEYRNILASASADKRVKIWDVVAEKCDITMEHHSDKVQAVAWNHHAPQILLSGSFDHTVVLRDGRMPSHSGYKWSVTADVESLAWDPHTEHYFVCFDVRTAKSESTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGSMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSDGKLQVWDTLSEAGVSRRYESYKKNRSQSQS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271866g00050 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 462 IPR001680 GO:0005515
Stsc271866g00050 476 Gene3D - 96 330 IPR015943 GO:0005515
Stsc271866g00050 476 FunFam Putative WD repeat-containing protein C17D11.16 330 463 - -
Stsc271866g00050 476 Pfam WD domain, G-beta repeat 249 280 IPR001680 GO:0005515
Stsc271866g00050 476 Pfam WD domain, G-beta repeat 426 453 IPR001680 GO:0005515
Stsc271866g00050 476 Pfam WD domain, G-beta repeat 285 321 IPR001680 GO:0005515
Stsc271866g00050 476 Pfam WD domain, G-beta repeat 372 408 IPR001680 GO:0005515
Stsc271866g00050 476 FunFam Transducin/WD40 repeat-like superfamily protein 75 328 - -
Stsc271866g00050 476 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 472 IPR044285 GO:0006364
Stsc271866g00050 476 SUPERFAMILY WD40 repeat-like 131 453 IPR036322 GO:0005515
Stsc271866g00050 476 ProSitePatterns Trp-Asp (WD) repeats signature. 267 281 IPR019775 -
Stsc271866g00050 476 PRINTS G protein beta WD-40 repeat signature 440 454 IPR020472 -
Stsc271866g00050 476 PRINTS G protein beta WD-40 repeat signature 395 409 IPR020472 -
Stsc271866g00050 476 PRINTS G protein beta WD-40 repeat signature 267 281 IPR020472 -
Stsc271866g00050 476 Gene3D - 333 473 IPR015943 GO:0005515
Stsc271866g00050 476 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 375 413 - -
Stsc271866g00050 476 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 281 - -
Stsc271866g00050 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 417 IPR001680 GO:0005515
Stsc271866g00050 476 SMART WD40_4 368 408 IPR001680 GO:0005515
Stsc271866g00050 476 SMART WD40_4 238 280 IPR001680 GO:0005515
Stsc271866g00050 476 SMART WD40_4 283 323 IPR001680 GO:0005515
Stsc271866g00050 476 SMART WD40_4 176 215 IPR001680 GO:0005515
Stsc271866g00050 476 SMART WD40_4 413 453 IPR001680 GO:0005515
Stsc271866g00050 476 ProSitePatterns Trp-Asp (WD) repeats signature. 395 409 IPR019775 -
Stsc271866g00050 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 281 IPR001680 GO:0005515
Stsc271866g00050 476 MobiDBLite consensus disorder prediction 33 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271866g00050 Stsc-Chr271866 328045 331496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271866g00050 264 453 U-box Gene Family AT2G33340 28.986 1.41e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271866g00050 K14791 - gmx:100807947 737.258