Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271866g00045 ATGCAATCAGATAATGGCAAGTTATTTATTGGGGGGATATCATGGGACACGAATGAAGACCGACTCCGGGAGTATTTTGGTACTTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGCACCACCGGTAGAGCCCGTGGATTTGGTTTTGTTGTCTTTTCGGACCCATCTGTGGCAGACTTAGTCATAAAAGAGAAGCACAATATAGATGGAAGGATGGTGGAGGCAAAGAAGGCTGTCCCCAGGGATGATCAGAATATACTGAGTAGAAACAGTGGCAGCGTCCATGGTTCTCCCGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCATCTACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGAACTATCACGGATGTTGTAGTAATGTATGATCACAACACTCAAAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAGGAGGCTGTTGACAAGGTTTTACTTAATACTTTCCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTGCCTAAGGAGTTATCGCCAGGACCGAACCGCAGCCCACTTCCTGGATTCAACTATGGTCTGAGTAGGGTCAATAACTTCTTAAATGGATTCACTCAGGGATACACTCCAAGTGCAGTTGGAGGCTATGGACTTCAGGTGGATGGTAGATTCAGTCCGGTTGCAAGTGCTCGAACTGGATTTGCTCCATTTGGATCTGGTTATGGAATGAGCATGAATTTTGAACCTAGTTTGGGTGCTGGATTTGGGAGGAGTGGAAATTTCAATAGTAATCTTAGCTATGGTCGGGGGTTGAATCCTCCTTATATGGGCAGCTCCAATAGGCTTGGGAGCCCTATGGGTTATGACAGTGGTAATGCAGGAAGCAATTCGTTTTTCAGCTCCGCTACACGGAATTTGTGGGGTAATGGTGGCCTTAACTATGGAACCGGTTCTGCAAATTCAAGTGCATACGTTGGATCAGGGAGTGGAAGCGTTGGAGGAAATGCCTTTGGCAATGCTGGTGTCAATTGGGGTTCTTCAGCAGTTTCTGCACAAGGCGGTGGTAACAATATGCTACAGAATAGTGGCAACCTTGGTTATGGGGGTGGTGAGAACAGTTATAGTTTGGGGACTGGAGGTTATGGAAGAAGCAGTGGTTCTGCTATTGCCCCAACATCTTCATACACTGCTTCAAACGGCGGCGTCGATGGTGCTTTTGCCGATTTTTACAATAATAATTCGGTTTATGGGGACGCCACCTGGCGTACTTCAAATTCTGAGCGAGATGGATCTGGTCCCTTCAGTTATGGACTTGGTGGCTCGGCTACAGATGTTTCAGGCAAAAGCTCTCCGGGTTATGTCGGGGGTTATACTATTAATAAGAGGCAGCCAAATAGGGGAATTGCTACATAG 1437 0.46 MQSDNGKLFIGGISWDTNEDRLREYFGTYGEVVEAVIMKDRTTGRARGFGFVVFSDPSVADLVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSVHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLNTFHELNGKMVEVKRAVPKELSPGPNRSPLPGFNYGLSRVNNFLNGFTQGYTPSAVGGYGLQVDGRFSPVASARTGFAPFGSGYGMSMNFEPSLGAGFGRSGNFNSNLSYGRGLNPPYMGSSNRLGSPMGYDSGNAGSNSFFSSATRNLWGNGGLNYGTGSANSSAYVGSGSGSVGGNAFGNAGVNWGSSAVSAQGGGNNMLQNSGNLGYGGGENSYSLGTGGYGRSSGSAIAPTSSYTASNGGVDGAFADFYNNNSVYGDATWRTSNSERDGSGPFSYGLGGSATDVSGKSSPGYVGGYTINKRQPNRGIAT 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271866g00045 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Stsc271866g00045 478 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Stsc271866g00045 478 SMART rrm1_1 7 78 IPR000504 GO:0003723
Stsc271866g00045 478 SMART rrm1_1 107 179 IPR000504 GO:0003723
Stsc271866g00045 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Stsc271866g00045 478 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Stsc271866g00045 478 Gene3D - 103 189 IPR012677 -
Stsc271866g00045 478 CDD RRM2_Hrp1p 107 184 - -
Stsc271866g00045 478 Gene3D - 4 88 IPR012677 -
Stsc271866g00045 478 MobiDBLite consensus disorder prediction 431 478 - -
Stsc271866g00045 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Stsc271866g00045 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Stsc271866g00045 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Stsc271866g00045 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 474 - -
Stsc271866g00045 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Stsc271866g00045 478 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271866g00045 Stsc-Chr271866 308019 311546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271866g00045 8 268 Eukaryotic Initiation Factors Gene Family AT1G71770 29.180 2.22e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271866g00045 K14411 - gmx:100795907 831.247