Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271866g00043 ATGGTTTCCTCAGAAGAAACTGCAGATCACATTGTTCCTTATGCTATACCGGCAACACCGCTGCAGATAGCAAGTCCCCATAGTGATATTACAGAATCACAAGGGATTCATGAAGCTGAAATCCCTTCATCCAAACCAAGGGAAGAAACAAGCATTCCTTCTGCAGTGGCTCAAAACAAAGTGAAAGATTCTGATGCCACTGCTTCTGTGTTGCAATCAGATCAAGAAGGAAGAACACATGTTGCAGTATCAGTTGAAAAACTTGTGCAGAGCCATGATACCCCTTTTCGTGAACCACGTCATCCATTACAATCTGGTCATGACAGTCCGTCGATAATAAGAGAAAGGGTATCAAAAGATGGGTATAACTGGCGAAAATATGGCCAGAAAAATGTTAAAGGGAATGAATTTATAAGGAGCTATTACAAGTGTACACATCCGAACTGCCAGGCAAAGAAACAGTTAGAGCAGTCAAATGATGGCCGGATTACAGATTCAATTTGCATTGGTCAGCATAATCATCCTAGGCCTCAATCGAACATCACAAAGGCCATTGTTCCTGTTGTTGAAGAAGGACCAGACAAGCCCTGTGTTGCCAATGTGGAAGGTGAAGACAAAGCATTGAATGAGCATGGAAGTGTACCTCAACGGATGAAGTCTTCACACATCCTTCAGATTACAAATGTTCCTGCAGCTGATTTGGCGAAATCTGCACATTCACAACTGACCACAGCAGATGACGAGGTCCACAACAATGACTATCCTGATTCAAAGCGGCAGAAGATAGACAATAGTAATACTGAAGTCAGTGTAGCTGACAAGTCAATTTGTGTGTCTCGTGTCGTCGTTCAAACTTCGAGTGAGGTTGATTTTGTAAATGATGGCTACCGTTGGCGCAAATATGGTCAGAAAATAGTTAAAGGAAATGCAAATCCCAGAAGTTATTATCGATGCTCTGCTCCTGGATGCTTTGTCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAGTTGTAATAACTACCTATGAGGGACAACATATTCATGGAATCCCACCTGGAAGGACTGTCAGTCAAAATGCAGCTACAAATGCTCAAACAACGACCATTAATGGCAAGCCAGGAACCAATTCTGTAGCAAACCCTGTTTCTATAGATACAAGGAGAAGCAGACCAAATGAGCAAGTAAAGGGAAACTCAATTACTAAATCAGAGGCTGGTAAGAGTCCTGAAAGCAAATCAAATGGGCAACAACAACAAGAAGAAAATGAAAATGCAGTTGCCAAAGAGGTCTCTGTTGGTGCTAACATCACATGCCAATCGAATTCTGAAGACCCATGTCGATCAAAATCAAACGAACAGCCGAAAGATGAGGTAGAAACTAAATCAGAAGGAAAGAACGAATCCCCTAATGTGGTTGCTGTTAATGATACTCCAGGTCAAGAAGGTCAACTCAAGAAGCAATCATCATCAGATGCAGAAGCTGTCCAAAGCTAA 1497 0.4195 MVSSEETADHIVPYAIPATPLQIASPHSDITESQGIHEAEIPSSKPREETSIPSAVAQNKVKDSDATASVLQSDQEGRTHVAVSVEKLVQSHDTPFREPRHPLQSGHDSPSIIRERVSKDGYNWRKYGQKNVKGNEFIRSYYKCTHPNCQAKKQLEQSNDGRITDSICIGQHNHPRPQSNITKAIVPVVEEGPDKPCVANVEGEDKALNEHGSVPQRMKSSHILQITNVPAADLAKSAHSQLTTADDEVHNNDYPDSKRQKIDNSNTEVSVADKSICVSRVVVQTSSEVDFVNDGYRWRKYGQKIVKGNANPRSYYRCSAPGCFVKKHVERASHDSKVVITTYEGQHIHGIPPGRTVSQNAATNAQTTTINGKPGTNSVANPVSIDTRRSRPNEQVKGNSITKSEAGKSPESKSNGQQQQEENENAVAKEVSVGANITCQSNSEDPCRSKSNEQPKDEVETKSEGKNESPNVVAVNDTPGQEGQLKKQSSSDAEAVQS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271866g00043 498 Gene3D WRKY domain 111 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271866g00043 498 MobiDBLite consensus disorder prediction 466 498 - -
Stsc271866g00043 498 FunFam WRKY transcription factor 107 178 - -
Stsc271866g00043 498 MobiDBLite consensus disorder prediction 30 78 - -
Stsc271866g00043 498 MobiDBLite consensus disorder prediction 249 263 - -
Stsc271866g00043 498 FunFam WRKY transcription factor 57 278 352 - -
Stsc271866g00043 498 ProSiteProfiles WRKY domain profile. 287 352 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271866g00043 498 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 70 367 IPR044810 GO:0003700
Stsc271866g00043 498 MobiDBLite consensus disorder prediction 47 78 - -
Stsc271866g00043 498 MobiDBLite consensus disorder prediction 449 465 - -
Stsc271866g00043 498 MobiDBLite consensus disorder prediction 90 113 - -
Stsc271866g00043 498 MobiDBLite consensus disorder prediction 367 498 - -
Stsc271866g00043 498 SMART WRKY_cls 118 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271866g00043 498 SMART WRKY_cls 292 351 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271866g00043 498 SUPERFAMILY WRKY DNA-binding domain 284 352 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271866g00043 498 Pfam WRKY DNA -binding domain 119 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271866g00043 498 Pfam WRKY DNA -binding domain 293 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271866g00043 498 MobiDBLite consensus disorder prediction 239 265 - -
Stsc271866g00043 498 ProSiteProfiles WRKY domain profile. 113 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271866g00043 498 MobiDBLite consensus disorder prediction 367 426 - -
Stsc271866g00043 498 MobiDBLite consensus disorder prediction 434 448 - -
Stsc271866g00043 498 SUPERFAMILY WRKY DNA-binding domain 114 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271866g00043 498 Gene3D WRKY domain 279 345 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271866g00043 Stsc-Chr271866 291198 294919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271866g00043 103 366 WRKY Transcription Factor Family AT2G04880 48.352 1.10e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc271866g00043 WRKY 1.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271866g00043 K18834 - gmx:100781219 496.123