Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271866g00042 ATGCAGGCATCAGAGCATCATAGAAGTCCAAGTATGTATTATCAACCAATGCAGCAGGTTGAGGCATACTGCTTGCCGCAATATCAATCTCTCAATCATCACCAGTACTACAATGATGGAGGCCATGGTACTGGAAGCAGATTCTCTAATCAAAGTTCTTCTGAAATTTACTGCACATTGGAGTCATCATCTGCAACTGGCAGTTTCAATGTTTACAATTCTCCTTCAACTGTTAGTTTCTCACCGAACGGTAGCCCAATTTCGCATCAAGATTCTCAGTCTCATTCATATCCACCTGACAATAACTATGAATCTCCTATGAGTGGTTCGTGCATAACCGACGATTTAAGTACCTTCAAGCACAAGCTGAGAGAGTTGGAGAGTGTGATGCTGGGTCCTGACTGTGATAATCTTGATAGCTATGACAGTGCATTCAATGATGCGACCGATTTCATGTCATCCGAGATGGACAGCTGGAGACAAACAATGGTGGCTATTTCTAGTAAGAACTTAAAGCATGTCCTTGTTGTGTGTGCCAAAGCCATTGCAGACAATGATTTGCTAATGGCACAATGTCTGATGGATGAATTGAGGCAGATGGTGTCTGTCTCTGGCGAACCGATTCAAAGGCTGGGAGCATACATGTTGGAAGGCCTAGTTGCACGGTTGTCTTCCTCTGGGAGTTCAATCTACAAAGCCTTGAGATGCAAGGAACCAGAAAGTTCTGAGCTCCTCTCCTATATGCACATACTCTATGAGGTTTGTCCCTACTTCAAATTTGGATACATGTCTGCTAATGGAGCGATCGCAGAGGCTATGAAAGACGAAAATAGAGTTCACATAATTGATTTTCAAATTTCTCAAGGGAGCCAGTGGATCACTTTGATTCAAGCTTTTGCAGCTAGGCCTGGAGGACCACNNNNNNNNNNCACAGGTATAGATGATTCAACATCGGCTTATGCACGCGGTGGTGGGCTGCATATTGTGGGGAAGAGGTTGTCCAAGCTTGCAGAGCATTTTAAGGTGCCATTTGAATTTCATGCTGCAGCTATATCTGGTTGTGATGTTCAGCTGCATAATCTTGGTGTTCAACCGGGCGAGGCATTAGCTGTGAATTTTGCATTCATGCTGCATCACATGCCAGATGAAAGTGTTAGCACCCAGAATCACAGGGATAGGCTCTTGAGGCTGGTGAAGAGCCTATCCCCGAAAGTGGTGACATTGGTGGAGCAAGAATCCAACACAAACACAGCTGCATTCTTTCCACGTTTCCTCGAAACTATGGACTACTACACAGCCATGTTCGAGTCGATAGACGTGACGCTTCCAAGGGATCATAAAGAGAGGATCAATGTTGAGCAGCATTGCCTGGCAAGGGATTTGGTTAACATCATAGCATGTGAAGGGGTTGAGAGAGTGGAAAGACATGAAGTGCTTGGGAAATGGAGGTCAAGGTTTGCAATGGCTGGTTTCAGTCCTTACCCTTTGAGCTCGTTGGTGAATAGTACCATCAAGAAACTGCTTGATAACTACAGTGATAGATATAGGCTTGAAGAGAGAGATGGAGCATTGTATCTTGGTTGGATGAATAGAGATTTGGTTGCATCTTGTGCATGGAAATGA 1623 0.4418 MQASEHHRSPSMYYQPMQQVEAYCLPQYQSLNHHQYYNDGGHGTGSRFSNQSSSEIYCTLESSSATGSFNVYNSPSTVSFSPNGSPISHQDSQSHSYPPDNNYESPMSGSCITDDLSTFKHKLRELESVMLGPDCDNLDSYDSAFNDATDFMSSEMDSWRQTMVAISSKNLKHVLVVCAKAIADNDLLMAQCLMDELRQMVSVSGEPIQRLGAYMLEGLVARLSSSGSSIYKALRCKEPESSELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDENRVHIIDFQISQGSQWITLIQAFAARPGGPXXXXTGIDDSTSAYARGGGLHIVGKRLSKLAEHFKVPFEFHAAAISGCDVQLHNLGVQPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETMDYYTAMFESIDVTLPRDHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFSPYPLSSLVNSTIKKLLDNYSDRYRLEERDGALYLGWMNRDLVASCAWK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271866g00042 540 MobiDBLite consensus disorder prediction 80 109 - -
Stsc271866g00042 540 Pfam GRAS domain family 171 540 IPR005202 -
Stsc271866g00042 540 ProSiteProfiles GRAS family profile. 162 540 IPR005202 -
Stsc271866g00042 540 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 143 534 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271866g00042 Stsc-Chr271866 288226 291058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271866g00042 12 540 GRAS Transcription Factor Family AT5G48150 66.418 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc271866g00042 GRAS 2.2e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271866g00042 - - gmx:100808300 931.013