Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271866g00040 ATGTATGGTACTGATGTTGCCGATACTGGCCTACTACGTATAAACAGTCTCGATTTCGGGGATCCACTTCGAAAACATGAAATGCATTGCAGGTTCAAGCAGAGGCCTCCTTTACCTTGGAAAGCAATCTATTACTCGGTTGGCATACTTCTCATTGTTTTGCTTATTGGTGTTATATATTACATAGCCATAAAACGAATAGAAAAAGTGGAGGATGACACTCAAAAAATGGAGGAGCTGAAAGTTCGTGCTGAAGCTGCAGATGTTGCAAAGTCTCAGTTTCTTGCAACAGTTTCCCATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGAACTTGATGAAAACCAGATGGATTATGCTCAAACTGCCCATAAGAGTGGTAAGGATCTTATATCAGTGATAAATGAGGTTCTTGATCAGGCTAAGATTGAGGCACGCAAGCTTGAACTTGAAGCTGTGGCTTTTGATCCACATGCTATTCTAGAGGAAGTTCTATCATTTTTCGCAGGAAAGTCTAAAGAAAAAGGAATTGAGTTGGCTGTTTATGCGTCCAATGAAGTACCCAAAGTTGTCATTGGCGATCCTAAACGGTTCTGGCAAATAATTACTAATCTTGTTGGCAATTCACTCAAGTTCACTCATGATAAAGGACATGTGTTTGTCTCGGTTCATCTGGCGAATGAAGTGAAGAGCCCACTTCACAGCATGGATGCTGTGCTAAGGGAAGGCTTAAAGTTGGATTATGATTCATCAGACAAAACATATAATACATTAAGTGGGTTTGCTGTAGGAAATCGATGGAAAAGCTGGGCAAATTTTAAAAAGTTAAATACTGTAGATTTGATGGATGAGCCTGAATTGATTCAACTACTAGTGACAGTTGAGGATACAGGTATAGGAATTCCTATGGATGCGCAGAGCCGTATATTCACGCCTTTTATGCAGGCCGATAGTTCGACCTCCCGAACATATGGTGGAACTGGAATAGGACTGAGCATTAGTAGATGTCTTGTTGAGCTCATGGGAGGAGAAATTGGATTTGTTAGTGAGCCTGGAACTGGCAGTACTTTTGCATTTACTGCAACTTTCAGAAAAGGAGAAACCACATCTTTGGATGCAAAGTGGCAGAATTTCAGTACTCTTGATTCACAATTTCAAGGGTTGAGAGCATTAGTGGTAGATAGAAGAAAAATAAGAGCTGAGGTCACAAGGTATTATCTGCAGAGGTTGGGGATGTCGGTCGATGTTACTTTGAGTCTGAAATCTGCATGTTCTTGTCTAACTGGTGCTTGCAACATGAGAGTGTCGAAGCAGTTTGCCATGATTCTGATAGACAAGGATGCTTGGGATAAGGAAAGTAGCATCTTATACTCCATCAAGAAACAAAGAGAGAATGGCATCAATGGGGACCCAATAAACTTTCCAAAAGTTTATCTCCTGGCCACACACCTTAGCCGAAACGAACGTGATGAGCTCAAGAAAAATGGTGTCATTGATGATATATTAATGAAGCCACTTTGGCTTAGTGTTTTGGTTCGCTCCTACAGAGAATCCCTTGGAATTGAAAAAAGGCAAATAAATAGGAAGAGAGTATCAAAACTTGGGAGTTTGTTATCTCAGAAAAGAATTTTGGTGGTTGATGATAATGCAGTGAACAGAAAAGTTGCAGAAGGTGTTCTACAGAAATATGGTGCAGCTGTTACTTGTGTGGAAGGTGGCAGGGCTGCTCTACAGATGCTTAAGCCACCACACAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGTGACAAGGCAAGTCCGTATCCTAGAGAACGATGTAAATGAGAAAAATGCTTGTGGGGAAGCATCAGCTGAAATTTTTGGCAATATCTTTTATTGGCACATTCCAATACTAGCAATGACAGCTGATATAACTCAGGCTTCAAATGAAGAGTGCAAAAAGTGTGGGATGGATGGCTATGTGTCCAAGCCGTTCGAGGNNNNNNNNNNCCTAGTTCATAGTGTGGAAGAATTTGATGCTGTTATTTGA 2079 0.406 MYGTDVADTGLLRINSLDFGDPLRKHEMHCRFKQRPPLPWKAIYYSVGILLIVLLIGVIYYIAIKRIEKVEDDTQKMEELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDYAQTAHKSGKDLISVINEVLDQAKIEARKLELEAVAFDPHAILEEVLSFFAGKSKEKGIELAVYASNEVPKVVIGDPKRFWQIITNLVGNSLKFTHDKGHVFVSVHLANEVKSPLHSMDAVLREGLKLDYDSSDKTYNTLSGFAVGNRWKSWANFKKLNTVDLMDEPELIQLLVTVEDTGIGIPMDAQSRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFAFTATFRKGETTSLDAKWQNFSTLDSQFQGLRALVVDRRKIRAEVTRYYLQRLGMSVDVTLSLKSACSCLTGACNMRVSKQFAMILIDKDAWDKESSILYSIKKQRENGINGDPINFPKVYLLATHLSRNERDELKKNGVIDDILMKPLWLSVLVRSYRESLGIEKRQINRKRVSKLGSLLSQKRILVVDDNAVNRKVAEGVLQKYGAAVTCVEGGRAALQMLKPPHNFDACFMDLQMPEMDGFEVTRQVRILENDVNEKNACGEASAEIFGNIFYWHIPILAMTADITQASNEECKKCGMDGYVSKPFEXXXXLVHSVEEFDAVI 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271866g00040 692 Gene3D - 63 153 - -
Stsc271866g00040 692 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 202 371 IPR003594 -
Stsc271866g00040 692 Pfam Response regulator receiver domain 552 621 IPR001789 GO:0000160
Stsc271866g00040 692 SUPERFAMILY CheY-like 393 527 IPR011006 -
Stsc271866g00040 692 SMART HisKA_10 90 155 IPR003661 GO:0000155|GO:0007165
Stsc271866g00040 692 CDD HisKA 90 151 IPR003661 GO:0000155|GO:0007165
Stsc271866g00040 692 PRINTS Bacterial sensor protein C-terminal signature 317 327 IPR004358 GO:0016310|GO:0016772
Stsc271866g00040 692 PRINTS Bacterial sensor protein C-terminal signature 358 371 IPR004358 GO:0016310|GO:0016772
Stsc271866g00040 692 PRINTS Bacterial sensor protein C-terminal signature 299 313 IPR004358 GO:0016310|GO:0016772
Stsc271866g00040 692 PRINTS Bacterial sensor protein C-terminal signature 334 352 IPR004358 GO:0016310|GO:0016772
Stsc271866g00040 692 CDD HATPase_EvgS-ArcB-TorS-like 209 372 - -
Stsc271866g00040 692 PANTHER TWO-COMPONENT HISTIDINE KINASE 12 676 - -
Stsc271866g00040 692 Gene3D - 531 689 - -
Stsc271866g00040 692 ProSiteProfiles Response regulatory domain profile. 398 528 IPR001789 GO:0000160
Stsc271866g00040 692 Pfam His Kinase A (phospho-acceptor) domain 90 154 IPR003661 GO:0000155|GO:0007165
Stsc271866g00040 692 SMART REC_2 550 685 IPR001789 GO:0000160
Stsc271866g00040 692 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 144 369 IPR036890 -
Stsc271866g00040 692 Gene3D - 155 376 IPR036890 -
Stsc271866g00040 692 SUPERFAMILY CheY-like 548 677 IPR011006 -
Stsc271866g00040 692 Coils Coil 140 160 - -
Stsc271866g00040 692 CDD REC_hyHK_CKI1_RcsC-like 552 676 - -
Stsc271866g00040 692 FunFam Histidine kinase 4 62 153 - -
Stsc271866g00040 692 Coils Coil 67 87 - -
Stsc271866g00040 692 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 77 156 IPR036097 GO:0000155|GO:0007165
Stsc271866g00040 692 Gene3D - 391 530 - -
Stsc271866g00040 692 ProSiteProfiles Histidine kinase domain profile. 97 374 IPR005467 -
Stsc271866g00040 692 SMART HKATPase_4 202 374 IPR003594 -
Stsc271866g00040 692 ProSiteProfiles Response regulatory domain profile. 551 688 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271866g00040 Stsc-Chr271866 274498 278491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271866g00040 1 676 Miscellaneous Gene Families AT5G35750 62.482 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc271866g00040 HATPase_c 2.1e-31 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271866g00040 K14489 - gmx:100805107 1060.44