Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271866g00004 ATGGAGATCCAAGAAGCAAAGTTTCTCTGCAGCTACGGCGGTCAGATCGAGCTCACCTACGTCGGCGGCCGCAACAAGCTCGCCTACGTCGGCGGCATCAATAAGATCCTTTACGTTGACCGCCGAATTGACTTCACAGGTATGGTTGCCCAAATCTGTGGCCTCTTTGACATAGCTTGCAACGGTCATAACTTCAAATACCAGTTCCCCGGCGGCAATGATCTCGTCTCCGTCACCAACGACAGCGACCTCCACAACATGATGCTGGAGTTTGATCAACTCTACCGTGTTTCCCCTAGAACTGCCCGCATGAGACTCTTCCTCTTCCCAAACCCTAACCAACCTCTCGATTCGGTTAAGCAAAATTCAAATGGCCTATCTTCGAATCTTGAAAAGTATGACGTGTTTATCAGCTTTAGAGGCGAGGAAAGACTTAGTAAATTCACTTCCAGTCTTCGTGAAGCTCTGATTCCAAAACAAATAAAAACCTTCATTGATGATGCGATTCACGAAGGGGATTGCATCTCTGCTTCTCTCGGAAGAGCAATTGAAGGTTCGTCTGTATTTGTGGTTGTATTCTCAAAGAATTATGGTATCCCAAGTTGGTGCCCTGATGAGTTATTGAAAATCATGGAGTGCGGGAGGAAAGTTATACCTGTGTTCTATGGTGTGGATCGATCACATGTACGGAAGCAACTAGAAAGTTTCATTGAAGAAGGCGTAAGTCACTCGCAGCATGACATGAACAAGGTTAAAAAATGGAAGGAAGCTCTCGCTGAGGCAGCAGATTTAGAAGGCTGGGACTCTAGCACTTGTAGGGACGACTTTGAACTTGTTGAAAAGATTGTCAAAGATGTTTTGCGAAAGCTGGAAAATCATTGCCTGCCTAAGGATGTCAAGAGTGTAGTTGGTATTAATAAAAATCTTGAAAAGTTAGAAAAGTTATTAAGTTCATTTCCTGATGAACAAATTGCAATAATTGGGATTTGTGGGATGGGAGGGGTGGGCAAAACAACTTTAGCAAGAATTGTGTATCAGAAACTTTCTTATCAGTATGAAGGTTCCTGCTTCTTAGGAAATGTTCAGGAAAGATCGAAAAAGTATGGGCAGGGGCTAGATAAGTTGCTTAATCAACTTCACTCGGAGTTGTTACAAGAAAAAGATTGCCAAAATAGCATGGGAAATACAACTTCTGCAAAGTGCAGGCTCTGCAGACAAAGAAGTTTCATAGTTCTTGATGATGTGGGTAGTTCAAAGCAATTAGAATACCTAATTGGGGACCTTCAATGCTATGGTGCAGGAAGTAGAATCATTGTAATTACGGGGGACAAGAGTGTGCTGGAAAAAAGAGTTGAAAAAATTTATAAGATGGAGGTATTAGATTTTCAAGATTCCCTTGCATTGTTTAGCTTGAATGCATTCAATCAAAACTATCCAAAAATGGGATACCAAGAGCTATCATGGAAAGCAGTTACCTACTGCAAAGGTGTCCCATTATCTTTAAAAGTATTGGGTTCTTTTCTTCATTCCAAGAGTGAAACTGAATGGGATAGTGCATTGCAAAAACTCGAGAAGAATCCTAATGCAGCAATTCAAAATGTGTTAAGATTGAGTTACGATGGGTTAGATTATCAGCAGAATCACATTGTGTTGGACATTGCAACATCTTCTACGGGAGAGCAGAAAGAACAGAGAGTTGATGTATTAATAAGTTCCCTTCTTGTCGAGGCTCTAATAGCTATATATTATCATTTTGTGTTGTTGCATGATTTGAACAAGAAATGGCGTGGGGAATCCTTTGTCAGAAATCTATCAAGATTCCTGAAAATCATAGCCATTTGTGGGGTTTTCGTGATACTTTTGACGTGTTGGAAAACAGCAAGGTATGGGGCATAA 1896 0.4119 MEIQEAKFLCSYGGQIELTYVGGRNKLAYVGGINKILYVDRRIDFTGMVAQICGLFDIACNGHNFKYQFPGGNDLVSVTNDSDLHNMMLEFDQLYRVSPRTARMRLFLFPNPNQPLDSVKQNSNGLSSNLEKYDVFISFRGEERLSKFTSSLREALIPKQIKTFIDDAIHEGDCISASLGRAIEGSSVFVVVFSKNYGIPSWCPDELLKIMECGRKVIPVFYGVDRSHVRKQLESFIEEGVSHSQHDMNKVKKWKEALAEAADLEGWDSSTCRDDFELVEKIVKDVLRKLENHCLPKDVKSVVGINKNLEKLEKLLSSFPDEQIAIIGICGMGGVGKTTLARIVYQKLSYQYEGSCFLGNVQERSKKYGQGLDKLLNQLHSELLQEKDCQNSMGNTTSAKCRLCRQRSFIVLDDVGSSKQLEYLIGDLQCYGAGSRIIVITGDKSVLEKRVEKIYKMEVLDFQDSLALFSLNAFNQNYPKMGYQELSWKAVTYCKGVPLSLKVLGSFLHSKSETEWDSALQKLEKNPNAAIQNVLRLSYDGLDYQQNHIVLDIATSSTGEQKEQRVDVLISSLLVEALIAIYYHFVLLHDLNKKWRGESFVRNLSRFLKIIAICGVFVILLTCWKTARYGA 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271866g00004 631 Gene3D - 460 543 IPR042197 -
Stsc271866g00004 631 Pfam PB1 domain 25 110 IPR000270 GO:0005515
Stsc271866g00004 631 SUPERFAMILY Toll/Interleukin receptor TIR domain 126 267 IPR035897 -
Stsc271866g00004 631 PRINTS Disease resistance protein signature 494 508 - -
Stsc271866g00004 631 PRINTS Disease resistance protein signature 402 416 - -
Stsc271866g00004 631 PRINTS Disease resistance protein signature 326 341 - -
Stsc271866g00004 631 SUPERFAMILY CAD & PB1 domains 25 118 - -
Stsc271866g00004 631 ProSiteProfiles TIR domain profile. 131 290 IPR000157 GO:0007165
Stsc271866g00004 631 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 133 594 IPR044974 GO:0006952
Stsc271866g00004 631 FunFam Disease resistance protein (TIR-NBS-LRR class) 129 292 - -
Stsc271866g00004 631 FunFam Disease resistance protein (TIR-NBS-LRR class) 461 543 - -
Stsc271866g00004 631 Gene3D - 130 287 IPR035897 -
Stsc271866g00004 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 552 IPR027417 -
Stsc271866g00004 631 CDD ABC_ATPase 326 458 - -
Stsc271866g00004 631 SMART PB1_new 22 111 IPR000270 GO:0005515
Stsc271866g00004 631 SMART till_3 132 264 IPR000157 GO:0007165
Stsc271866g00004 631 Gene3D - 288 459 IPR027417 -
Stsc271866g00004 631 Pfam NB-ARC domain 307 533 IPR002182 GO:0043531
Stsc271866g00004 631 Pfam TIR domain 132 294 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271866g00004 Stsc-Chr271866 34275 37961 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271866g00004 303 591 WRKY Transcription Factor Family AT5G45050 30.719 1.58e-30 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271866g00004 - - adu:107464449 884.019