Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271866g00001 ATGGAAAACTACGATGCCAAGTTTCTCTGCAGTTATGGCGGCGAGATCCAACGCCATCCGAACGACACCAAGATCTCCTACGTTGGCGGCCACAACAAGATCCTCTACGTTGACCGTGGAATCGATTTCGCCACCATGCTCGCCGAACTCTCTGCCCTCTCTGGCACCGCTGACATCGCCTTCAAGTACCAACTTCCCGGCGACGAACACGACGCCCTTATCTCCGTCACTGGTGACAACGACCTACACAACATGATGCTCGAGTATGATAACCTCTACAGAGATTCCCCTAAAACCCCTCGTATGAGGCTCTTCATCTTCCCCGGCAACCGTTTCGATCTGGATTCCAATCCTGCTTCCACCGAAACCCTAACACCCAAGAAAACAGTCAAACAAAACAGCAAAGTCAACGGCGGTGCTGTTGTCGTTCTTCCGCCTCCGCCAGTTGATGTTAAAACAGAGCGGACTGATTGTTCTGATCTGACCCGGTTGAGTAGCCTGTTACCTGGTGCAAAGTATGATGTATTTATCAGTTTCAGAGGTGAAGACACACGCAGGGGTTTCCTTTCCCATCTTTGTAAAGCTCTGTCGCGAAAGCAGGTAGAGACCTTTGTGGATTTTAGGGTTCAGAAGGGAAGTGAGATCTCTGCTGCCCTTCTCAGAGCAATTGAAGAGTCGTTTGTATCGGTGGTTGTCTTCTCTGAGAACTATGCTTCTTCAAAGTGGTGCTTGGAAGAGCTTGTGAAAATAATGGATTGCTATAAAGAAAATGGACGGGTTGTTGTTCCTGTGTTCTATAATATAACTCCATCACGTGTGCGGAAACAGCTTCGTAGTTACAATGAAGAGGTTAAAAAGCACTTGCAGAATAATAGTATGAAGAAGGTTCAGAAATGGAGGGAAGCTCTCGCTGAAGCAGCAAATTTAGCTGGTTGGGATTCCAGCTCCTGTAGGGATGAGTCTGAGCTCATTCAAAAGATTGTTAAAGACGTTTTGCAGAAGCTGATTGATCACAACCCACCGAATGGTATTAAAAGTTTGGTAGGTATTGACAGAAATCTTGAAGATATAGATTCGTTGCTAGGAGAGGTCCTTGAAGTCAAAACAAGAATGATTGGAATTTGGGGTGTTGGTGGGATAGGAAAGACAACTCTAGCAAAACTTGTATTTGAGAGATACTCTTATCAGTATGAAGGGTCCTGCTTCTTGGAAAATGTTAGAGAAAGATCAGAAAAATATGGAGAGGAGCTATATGAATTACGTAATGAACTTTACTCAGAGTTGTTGCAGGAAAATAATTGCAAAGATAGCACAAGAAAATCCACCAATGTTGAGAGAAGGCTACGCAACAAAAGAATTTTTGTAGTTCTAGATGATGTGAGTTCTTCAGAGCAATTAAAATACCTTGTTGGGGAGCGTCAACATTATGGTCCAGGTAGTAAGATCATTATCACAGCTAGAGACAAGAGTGTATTAGCTCAATGGGTTGAAGATGAAGAAATATACAAGATGAAGGTGTTAAATTCTGAAGACTCTCTTACATTGTTTTGCTTGAATGCATTCAATCAACACCATCCGAGAAAGGGACATGAAAATCTATCACAGGAAGTAGTTAAGTATTGTGAAGGCTTACCGTTAGCTTTAAAAATATTGGGTTCTTTTCTTCGTTCCAAGAGTAAAACTGAATGGGATAGTGCATTGCAAAACATCAAGAAGATTCCGGGTGTACCAATTCTAAATGCATTAAAGTTGACTTATGATGAATTAAATTATGAGGAGAGAGAAATTTTTCTAGACATTGCATGTTTTTTTAAGGGATTGCTTAAAGAACACGTGATTAGTCTGTTAGGCAGTTGTGGCTTCGATGCAGCTAATGGTATGAGGTCCCTTCTTGATAAGTCTCTAATAGCTATATCTCATAATTCTGTGACGATGCATGACTTGATCCATGAAATGGCTTTGGAAATTGTTCGTGAAGAATCTATCAAAAATCCTGAAAATCGCAGCCGTTTGTGGGACTATAATGATATTAGGGATGTTTTGCGAAACAACAAGGGAACCGATGCAATTGAAAGCATAATGTTAGATATGTCTCGTATAGATGATCTAAACTTAAGTGCTGACACATTCAAAAAGATGTCTAGATTAAGATTGCTCAAATTGTATGTCTCGTCAGAGAAGGATGGTAAATTAAGTAATCTGCAGCTTCCTATAGGGTTGAAGCCATTAAGGTACTTTGAATGGCATGCATACCCTTTGTCAACATTGCCATCAAACTTTTGTCCTGAGAATCTTGTTACCCTTCGTATACAGAACAGTCAACTTAAAAGACTATGGGATGGAAAGCAGAATCTCATGAATTTAGAAGAAGTAGATTTAACTGGGTGTCAAAAGTTGGTAGAACTCCCAGATTTGTCTAAAGCAAATAATCTTAAAACTTTACGTCTGTCCAACTGTATAAGTTTGCCCCATGTCCATCCATCTATCTTATCACTTGGCAAGCTTGAGCTGTTGGATCTATTGAATTGCATGAAGCTTGAAATGCTTGGAAACAAGAACCATTCAAGATCTCTTAAGCACCTGTACGTTGATGGCTGCTCAAATCTGATAGAATTCGCTCTATCTTCAGAAGAAATAGAATACTTGGATTTAAGCCACACTGGCATCAAAGTATTGGACTCATCCATTGGCCGTTTCACCAAAGTGAAAGAGATATCTCTTTGTGGGCTAAGACTTGAGAATCTTCCAACCGGGTTGTCTCGCTTGAAATCTCTTGAGAAACTTTCACTCTTTGAATGTGGAAGGGTGGTTTCCAAGCAGAAGTTACATGATATATTTGAGGGCTTGCAATCATTGCAAAACCTGTCTCTGGTGAACTGTGATAGTTTATTTGAACTCCCCGGGAATGTCAGCCGCCTATCATCGTTACAAAAGTTACAGTTGGATGGAAGCAATGTGGAGACTTTGCCTGCGAGCATCAAGCATCTTTCAAATCTGGAATCACTCTCATTAATGGGTTGTAAGATGCTTCAATATTTACCAGAGCTTCCTCCATCCATTCGTCATTTGAAGGCCCTAAACTGTTCATTGCTGCAAACAGTACAATTTTCTTTATTTAGTTTTGGGCTACAAGAAGAAAAGCGTATAAATATTTCATTGCAGAATTGTGTGAATTTGGATGTGGAGAACTGTATTTATCCATTCCTTCAATATGTAAGGAAGCTGGCTTATGAATGTGAATTTAGGAGGAGAGGAGTAGGAAGAGAAAACGTTGTAGTTTGGAGAAGTGACTTATTTAAAATTTGTTACCCAGACTCCAGAGTACCAGAATGGTTCACATATCGGGCAGCGGGGTCTTCTATTACCTTTGAAGTAGCTCCTCCTTCCAGTTACTATTTTGGTTCGCTTCTGTGTCTTGTTCTCTCTTCACACAGTTCGGATTTCGAGCTTGATATTAAATGCAGATGCTTCTTGGAAGATGGAAACATGCACAAGTATTCGCTTGGCATATTATTCTTAAATCACATTCCAGTGAAAGGGGATTCAGACCATGTTTATATGGCGTATAACTTTAGCGGCATCTTTGATGTGGACAAGCTGGACCAATTAAATAATAAGATCGCCTCCTCCGGACATAAACCAAAACTCACGTTTGAATTCTTTGTTAGCAGTGGCATGGCTCGGGGCAAAAAAGATTTAAATTTGTTGATCAAAGAATGTGGTGTCTATCCGCTAAATGACACTTAA 3747 0.4059 MENYDAKFLCSYGGEIQRHPNDTKISYVGGHNKILYVDRGIDFATMLAELSALSGTADIAFKYQLPGDEHDALISVTGDNDLHNMMLEYDNLYRDSPKTPRMRLFIFPGNRFDLDSNPASTETLTPKKTVKQNSKVNGGAVVVLPPPPVDVKTERTDCSDLTRLSSLLPGAKYDVFISFRGEDTRRGFLSHLCKALSRKQVETFVDFRVQKGSEISAALLRAIEESFVSVVVFSENYASSKWCLEELVKIMDCYKENGRVVVPVFYNITPSRVRKQLRSYNEEVKKHLQNNSMKKVQKWREALAEAANLAGWDSSSCRDESELIQKIVKDVLQKLIDHNPPNGIKSLVGIDRNLEDIDSLLGEVLEVKTRMIGIWGVGGIGKTTLAKLVFERYSYQYEGSCFLENVRERSEKYGEELYELRNELYSELLQENNCKDSTRKSTNVERRLRNKRIFVVLDDVSSSEQLKYLVGERQHYGPGSKIIITARDKSVLAQWVEDEEIYKMKVLNSEDSLTLFCLNAFNQHHPRKGHENLSQEVVKYCEGLPLALKILGSFLRSKSKTEWDSALQNIKKIPGVPILNALKLTYDELNYEEREIFLDIACFFKGLLKEHVISLLGSCGFDAANGMRSLLDKSLIAISHNSVTMHDLIHEMALEIVREESIKNPENRSRLWDYNDIRDVLRNNKGTDAIESIMLDMSRIDDLNLSADTFKKMSRLRLLKLYVSSEKDGKLSNLQLPIGLKPLRYFEWHAYPLSTLPSNFCPENLVTLRIQNSQLKRLWDGKQNLMNLEEVDLTGCQKLVELPDLSKANNLKTLRLSNCISLPHVHPSILSLGKLELLDLLNCMKLEMLGNKNHSRSLKHLYVDGCSNLIEFALSSEEIEYLDLSHTGIKVLDSSIGRFTKVKEISLCGLRLENLPTGLSRLKSLEKLSLFECGRVVSKQKLHDIFEGLQSLQNLSLVNCDSLFELPGNVSRLSSLQKLQLDGSNVETLPASIKHLSNLESLSLMGCKMLQYLPELPPSIRHLKALNCSLLQTVQFSLFSFGLQEEKRINISLQNCVNLDVENCIYPFLQYVRKLAYECEFRRRGVGRENVVVWRSDLFKICYPDSRVPEWFTYRAAGSSITFEVAPPSSYYFGSLLCLVLSSHSSDFELDIKCRCFLEDGNMHKYSLGILFLNHIPVKGDSDHVYMAYNFSGIFDVDKLDQLNNKIASSGHKPKLTFEFFVSSGMARGKKDLNLLIKECGVYPLNDT 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271866g00001 1248 SMART PB1_new 20 109 IPR000270 GO:0005515
Stsc271866g00001 1248 Gene3D Ribonuclease Inhibitor 867 1041 IPR032675 -
Stsc271866g00001 1248 PRINTS Disease resistance protein signature 783 799 - -
Stsc271866g00001 1248 PRINTS Disease resistance protein signature 447 461 - -
Stsc271866g00001 1248 PRINTS Disease resistance protein signature 371 386 - -
Stsc271866g00001 1248 PRINTS Disease resistance protein signature 541 555 - -
Stsc271866g00001 1248 ProSiteProfiles TIR domain profile. 171 335 IPR000157 GO:0007165
Stsc271866g00001 1248 Pfam TIR domain 172 339 IPR000157 GO:0007165
Stsc271866g00001 1248 SUPERFAMILY Toll/Interleukin receptor TIR domain 166 312 IPR035897 -
Stsc271866g00001 1248 Coils Coil 403 423 - -
Stsc271866g00001 1248 Pfam NB-ARC domain 354 572 IPR002182 GO:0043531
Stsc271866g00001 1248 SUPERFAMILY CAD & PB1 domains 22 114 - -
Stsc271866g00001 1248 CDD PB1_UP2 9 107 - -
Stsc271866g00001 1248 FunFam Disease resistance protein (TIR-NBS-LRR class) 170 337 - -
Stsc271866g00001 1248 Pfam PB1 domain 21 108 IPR000270 GO:0005515
Stsc271866g00001 1248 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 173 871 IPR044974 GO:0006952
Stsc271866g00001 1248 Gene3D - 170 333 IPR035897 -
Stsc271866g00001 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 600 IPR027417 -
Stsc271866g00001 1248 Gene3D Ribonuclease Inhibitor 680 855 IPR032675 -
Stsc271866g00001 1248 Gene3D - 506 590 IPR042197 -
Stsc271866g00001 1248 Gene3D - 334 504 IPR027417 -
Stsc271866g00001 1248 SMART till_3 172 309 IPR000157 GO:0007165
Stsc271866g00001 1248 SUPERFAMILY L domain-like 645 1059 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271866g00001 Stsc-Chr271866 7330 15025 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271866g00001 173 979 WRKY Transcription Factor Family AT4G12020 35.187 5.53e-109 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271866g00001 - - adu:107472645 1932.53