Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271865g00052 ATGAAGGGGTTTGATATGAAAGCATGGGTTTGCCTTTCGCAGAACTTTGATATCGTTGACACTACAAAGAATGTGTTAAAAGGGATCCTTGGAGGTTCTTGTAGTAGTCTTGATGATTTCAATTCACTTCAACTTGCATTGAAGGAAAAACTCTCCAACAAAAAGTTTTTCATTGTTCTTGATGATGTTTGGAGCTATGATGGTGACAGATGGAGTAATTTTATAACCCCTTTTCGGTATGGGAAGAAGGGAAGTACTATTTTTCTGACTACTCGCGAGAAGAATGTTGCTTCGGTTGTTCAAAATTGTCAACCTTACTTTCTGAAGAAGTTATCCAAAGACTCTTGCTGGTCAGTGTTAGCAGACAATGCATGTTTTCCGCAATCGAATGGGAGTGCAGCACTTGATGAAATAGGTAGAAAGATTGTTGAGAAGTGTGATGGCTTGCCATTAACTGCAGAAACACTCGGGCGCTTGTTGCGGACAAAGTATGATGCTGAGAAATGGAACAAGATATTAAGGAGTGATATTTGGGAAATTCCTATGCTAGATAGTAATATTATTCCGGCATTGTTAATAAGTTACTATCATCTTCCTGCGTATTTAAAGCGTTGTTTTGTTTATTGCTTGCTGTTTCCAAAGGGTCATCTATTTGAGAAAGATGAGTTGATACTATTGTGGATGGCAGAAGATCTTTTAAGACCCCCAAAGAAAGGAGAGACTTTGGAAGAAGTTGGTTGCGAGTGTTTCGACGAGTTAGCTTCTAGAATGTTCTTCACACAGCATTTTCAAGATGGTGTGAACTATTTTGTGATGCATGATCTCTTGCTTGACTTAGCAGTGTTCCTTGCTGGAGACTTCTACTTCAGATTGGAAGAACTTGGTGAAGAAGAAGAGATAAGTATTCAAACTCGGCATCTGTGTGGAAGTTTATATCATTGTAGCTCAAAACTCTTCAATTCTATTTCTAAGGTAGAATCTCTGAGGACATTATTGTATAACAAATTCTCATCTCCTCCCTTCAACATTGAAGCTGCAACATGTGAGGTATTATCCAAGTGCAAGTTCTTGAGAGTTTTATCATTTCATAAACTTGATGTGCTGCCTGATTCGATAGGTGAATTGATCCATTTGCGTTACTTGGATCTCTCTTTTTCGAATATTAAGGCATTGCCTGAATCTTTCTGCAACTTGCATAATCTGCAAACTTTGAAGCTGTACTATTGCTCTAAGCTAACAATGCTGCCTATTGGTATGCATAATCTTGTGGAGTTGCGGCATCTTGATCTTCGAGGAACATCTCTAAAGGAAATGCCCAGAGAATTCAGCAAATTGAAACACCTGCAGATTCTAAGAAACTTTGTTGTGGGCAAGAACAAAGACAACAATGGACTTGAAGAGCTAGGAGGGCTTTCGAATCTTCAAGGACTATTTTGGATTGAAAAATTGGAGAATATTGTTGATGTTGAAGAAGCAAGGAGTGCAAGAAATAATTGA 1497 0.3834 MKGFDMKAWVCLSQNFDIVDTTKNVLKGILGGSCSSLDDFNSLQLALKEKLSNKKFFIVLDDVWSYDGDRWSNFITPFRYGKKGSTIFLTTREKNVASVVQNCQPYFLKKLSKDSCWSVLADNACFPQSNGSAALDEIGRKIVEKCDGLPLTAETLGRLLRTKYDAEKWNKILRSDIWEIPMLDSNIIPALLISYYHLPAYLKRCFVYCLLFPKGHLFEKDELILLWMAEDLLRPPKKGETLEEVGCECFDELASRMFFTQHFQDGVNYFVMHDLLLDLAVFLAGDFYFRLEELGEEEEISIQTRHLCGSLYHCSSKLFNSISKVESLRTLLYNKFSSPPFNIEAATCEVLSKCKFLRVLSFHKLDVLPDSIGELIHLRYLDLSFSNIKALPESFCNLHNLQTLKLYYCSKLTMLPIGMHNLVELRHLDLRGTSLKEMPREFSKLKHLQILRNFVVGKNKDNNGLEELGGLSNLQGLFWIEKLENIVDVEEARSARNN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271865g00052 498 PRINTS Disease resistance protein signature 50 64 - -
Stsc271865g00052 498 PRINTS Disease resistance protein signature 146 160 - -
Stsc271865g00052 498 PRINTS Disease resistance protein signature 396 412 - -
Stsc271865g00052 498 SUPERFAMILY L domain-like 271 477 - -
Stsc271865g00052 498 Pfam NB-ARC domain 3 173 IPR002182 GO:0043531
Stsc271865g00052 498 Gene3D - 110 193 IPR042197 -
Stsc271865g00052 498 Gene3D - 194 281 IPR036388 -
Stsc271865g00052 498 Gene3D Ribonuclease Inhibitor 310 487 IPR032675 -
Stsc271865g00052 498 PANTHER DISEASE RESISTANCE PROTEIN RP 9 484 IPR044974 GO:0006952
Stsc271865g00052 498 SMART LRR_typ_2 422 444 IPR003591 -
Stsc271865g00052 498 SMART LRR_typ_2 375 398 IPR003591 -
Stsc271865g00052 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 209 IPR027417 -
Stsc271865g00052 498 Gene3D - 1 105 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271865g00052 Stsc-Chr271865 314966 316462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271865g00052 368 466 WRKY Transcription Factor Family AT4G12020 37.736 6.16e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271865g00052 - - aip:110268297 667.151